Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq2 131 5e-26 seq6 123 8e-24 seq19 96.9 1e-15 seq11 89.7 2e-13 >seq2 Length=11374105 Score = 131 bits (144), Expect = 5e-26 Identities = 129/167 (77%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 25942 TTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGG 26001 |||||||| || ||||| || ||||||||||||||||| ||||| ||||| |||| |||| Sbjct 4329773 TTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCAATAGGG 4329714 Query 26002 TAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCAC 26061 |||| ||||| |||||| || ||||| ||||| |||||||| || ||| ||||| Sbjct 4329713 TAGATCAAGAAAACAGCAGTAGCAGCTGCTACAGGAGCTGAATATGCAACAGCAATCCAA 4329654 Query 26062 GGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTA 26108 || | ||| || | | |||| |||||||| | || |||| ||| Sbjct 4329653 GGACGCATACCCAAACGGAAACTTAGTTCCCACTCACGACCCATGTA 4329607 >seq6 Length=8045491 Score = 123 bits (136), Expect = 8e-24 Identities = 122/157 (78%), Gaps = 3/157 (2%) Strand=Plus/Minus Query 25863 ACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGC 25922 || |||||| || || || || | ||| ||||| || |||||||||| ||||||||| Sbjct 2591717 ACAGAATACACCAGCTACGCCTAACATGTGGAATGGGTGCATAAGGA---TGTGTTCTGT 2591661 Query 25923 CTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAA 25982 || || |||| || || ||||| || || ||||| || |||| || ||||||||| || Sbjct 2591660 CTTGAATACAATTATGAAGTTGAATGTACCAGAAATTCCTAGAGACAAACCATCAGAAAA 2591601 Query 25983 ACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCA 26019 ||| ||||| |||| |||||||| ||||| |||||| Sbjct 2591600 ACTTCCTTGACCAATAGGGTAGATCAAGAAAACAGCA 2591564 >seq19 Length=3929835 Score = 96.9 bits (106), Expect = 1e-15 Identities = 73/86 (85%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 |||||||| |||| ||||||||| || ||||| ||||||||||||||||| || | || Sbjct 3082548 GCTAAGTCTAGAGAGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 3082489 Query 25513 GCACGGTTAAGAATGTCAGCCCAAGT 25538 |||||||| | ||| ||||||||||| Sbjct 3082488 GCACGGTTGATAATATCAGCCCAAGT 3082463 >seq11 Length=5849386 Score = 89.7 bits (98), Expect = 2e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 25945 AAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAG 26004 |||| || ||||| || ||||||||||||||||| ||||| ||||| ||| ||||||| Sbjct 4649045 AAAGCACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCAGTAGGGTAG 4649104 Query 26005 ACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGG 26063 | ||||| | |||| ||| || | ||| | |||||||| || ||| ||||| || Sbjct 4649105 ATCAAGAAAAAAGCAGTTGCAACTACTACATGAGCTGAATATGCAACAGCAATCCAAGG 4649163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151993563901520