Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17]
20 sequences; 136,670,443 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq16 98.7 8e-16
seq7 84.2 2e-11
seq2 84.2 2e-11
>seq16
Length=4450370
Score = 98.7 bits (108), Expect = 8e-16
Identities = 159/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598
||| ||||| || || | |||| || |||||| ||| || || || || || || |
Sbjct 3338531 GCCTCCCCTGAGACGAAGGACCAGGTGGAGCGTGGACTCCTTCTGGATGTTATAGTCGGC 3338472
Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658
|| | || |||| |||| |||||| ||||| || ||||| ||||| || |||| |||
Sbjct 3338471 GAGGGTGCGGCCGTCCTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCCGGGGG 3338412
Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718
| |||||||||||| ||||| || || | | | || || | ||||||
Sbjct 3338411 GATGCCCTCCTTGTCCTGGATCTTAGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCAC 3338352
Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767
||||| ||| || || || || || | ||| || || || |||||||||
Sbjct 3338351 CTCCARCGTGATGGTCTTGCCGGTAAGAGTCTTGACGAAGATCTGCATC 3338303
>seq7
Length=7914316
Score = 84.2 bits (92), Expect = 2e-11
Identities = 140/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623
|| ||||| ||| || || |||||||| || | ||| ||| |||| || | ||||
Sbjct 4181305 TGGAGCGTCGACTCCTTCTGGATATTGTAGTCGGCGAGAGTTCTCCCGTCCTCGAGCTGC 4181246
Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683
|| ||||| || || || ||||| || |||| || | ||||||| ||| |||||
Sbjct 4181245 TTCCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGGATCCCCTCCTYGTCCTGGATCTTG 4181186
Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743
|| ||| | | || || || | ||| ||||| | ||| ||||| || ||||||
Sbjct 4181185 GCCTTCACATTGTCGATAGTGTCAGAAGACTCTACCTCGAGCGTGATCGTCTTCCCCGTC 4181126
Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766
| || || || || ||||||||
Sbjct 4181125 AGGGTCTTCACGAAGATCTGCAT 4181103
>seq2
Length=11374105
Score = 84.2 bits (92), Expect = 2e-11
Identities = 140/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623
|| ||||| ||| || || |||||||| || | ||| ||| |||| || | ||||
Sbjct 483663 TGGAGCGTCGACTCCTTCTGGATATTGTAGTCGGCGAGAGTTCTCCCGTCCTCGAGCTGC 483722
Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683
|| ||||| || || || ||||| || |||| || | ||||||| ||| |||||
Sbjct 483723 TTCCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGGATCCCCTCCTYGTCCTGGATCTTG 483782
Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743
|| ||| | | || || || | ||| ||||| | ||| ||||| || ||||||
Sbjct 483783 GCCTTCACATTGTCGATAGTGTCAGAAGACTCTACCTCGAGCGTGATCGTCTTCCCCGTC 483842
Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766
| || || || || ||||||||
Sbjct 483843 AGGGTCTTCACGAAGATCTGCAT 483865
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380937507146460
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |