Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq16 98.7 8e-16 seq7 84.2 2e-11 seq2 84.2 2e-11 >seq16 Length=4450370 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| || || | |||| || |||||| ||| || || || || || || | Sbjct 3338531 GCCTCCCCTGAGACGAAGGACCAGGTGGAGCGTGGACTCCTTCTGGATGTTATAGTCGGC 3338472 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || |||| |||| |||||| ||||| || ||||| ||||| || |||| ||| Sbjct 3338471 GAGGGTGCGGCCGTCCTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCCGGGGG 3338412 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | |||||||||||| ||||| || || | | | || || | |||||| Sbjct 3338411 GATGCCCTCCTTGTCCTGGATCTTAGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCAC 3338352 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 ||||| ||| || || || || || | ||| || || || ||||||||| Sbjct 3338351 CTCCARCGTGATGGTCTTGCCGGTAAGAGTCTTGACGAAGATCTGCATC 3338303 >seq7 Length=7914316 Score = 84.2 bits (92), Expect = 2e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || ||||| ||| || || |||||||| || | ||| ||| |||| || | |||| Sbjct 4181305 TGGAGCGTCGACTCCTTCTGGATATTGTAGTCGGCGAGAGTTCTCCCGTCCTCGAGCTGC 4181246 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || ||||| || || || ||||| || |||| || | ||||||| ||| ||||| Sbjct 4181245 TTCCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGGATCCCCTCCTYGTCCTGGATCTTG 4181186 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || ||| | | || || || | ||| ||||| | ||| ||||| || |||||| Sbjct 4181185 GCCTTCACATTGTCGATAGTGTCAGAAGACTCTACCTCGAGCGTGATCGTCTTCCCCGTC 4181126 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 | || || || || |||||||| Sbjct 4181125 AGGGTCTTCACGAAGATCTGCAT 4181103 >seq2 Length=11374105 Score = 84.2 bits (92), Expect = 2e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || ||||| ||| || || |||||||| || | ||| ||| |||| || | |||| Sbjct 483663 TGGAGCGTCGACTCCTTCTGGATATTGTAGTCGGCGAGAGTTCTCCCGTCCTCGAGCTGC 483722 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || ||||| || || || ||||| || |||| || | ||||||| ||| ||||| Sbjct 483723 TTCCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGGATCCCCTCCTYGTCCTGGATCTTG 483782 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || ||| | | || || || | ||| ||||| | ||| ||||| || |||||| Sbjct 483783 GCCTTCACATTGTCGATAGTGTCAGAAGACTCTACCTCGAGCGTGATCGTCTTCCCCGTC 483842 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 | || || || || |||||||| Sbjct 483843 AGGGTCTTCACGAAGATCTGCAT 483865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380937507146460