Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq2 132 5e-26 seq8 109 6e-19 seq6 104 3e-17 seq7 86.0 7e-12 seq3 84.2 2e-11 >seq2 Length=11374105 Score = 132 bits (146), Expect = 5e-26 Identities = 127/163 (78%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 162832 GGTCGTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATAC 162891 |||||| |||||||||| || ||| || ||||||||||||||||| ||||||||| Sbjct 4329613 GGTCGTGAGTGGGAACTAAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGTTGCATAT 4329672 Query 162892 TCTGCACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCT 162951 || || || ||| | || || ||||| |||||| |||| ||| | |||||||| | Sbjct 4329673 TCAGCTCCTGTAGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGT 4329732 Query 162952 TTCTCTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACT 162994 || ||||| | |||||||| || |||||||||||||| |||| Sbjct 4329733 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACT 4329775 >seq8 Length=7641483 Score = 109 bits (120), Expect = 6e-19 Identities = 127/170 (75%), Gaps = 6/170 (4%) Strand=Plus/Plus Query 163324 ACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGACG---CAGGT 163380 |||||||| |||||||| |||| |||| | || ||||||||| | |||||| | || Sbjct 525094 ACTATGGCTTTCAACCTAAACGATTTCCATTTTAACCAATCCATAGTTGACAATCCGAGT 525153 Query 163381 GGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTT 163440 || || ||| || |||| | |||||| | ||| || |||||||||||||| Sbjct 525154 CGT---GTTATTAATATTTGGACTGATATCATCAACCATGCTAATCTTGGTATGGAAGTG 525210 Query 163441 ATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCTGCTGA 163490 ||||| || ||||||||| |||||||||| || ||| | ||||| | ||| Sbjct 525211 ATGCATGAACGTAATGCTTACAACTTCCCTCTAGACTTAGCTGCAGTTGA 525260 >seq6 Length=8045491 Score = 104 bits (114), Expect = 3e-17 Identities = 117/156 (75%), Gaps = 3/156 (2%) Strand=Plus/Plus Query 162916 GCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGT 162975 ||||| |||||| |||| ||| | |||||||| ||| ||||| | || |||| || Sbjct 2591565 GCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTTTCTGATGGTTTGTCTCTAGGA 2591624 Query 162976 ATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCAC 163035 ||||||||||| || |||| ||| | || ||| | |||| | ||||||| |||||| Sbjct 2591625 ATTTCTGGTACATTCAACTTCATAATTGTATTCAAGACAGAAC---ACATCCTTATGCAC 2591681 Query 163036 CCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGT 163071 || ||||| ||| | || || || ||||||||| || Sbjct 2591682 CCATTCCACATGTTAGGCGTAGCTGGTGTATTCTGT 2591717 >seq7 Length=7914316 Score = 86.0 bits (94), Expect = 7e-12 Identities = 86/111 (77%), Gaps = 1/111 (1%) Strand=Plus/Minus Query 162698 TTCCTAGTTCAAATGCTATTGGTCTTCACTTCT-ATCCTATCTGGGAAGCAGCAACTCTT 162756 |||||| ||| ||||||||| | || || | |||| |||||||||||||||||| || Sbjct 495579 TTCCTACTTCTGCAGCTATTGGTTTGCATTTTTTATCCAATCTGGGAAGCAGCAACTGTT 495520 Query 162757 GATGAGTGGTTGTATAATGGTGGACCTTTCCAACTTGTAGTCTTCCACTTC 162807 |||||||||| || |||||||| |||| | || | | || | |||||| Sbjct 495519 GATGAGTGGTAATACAATGGTGGTCCTTACGAAYTAATCGTTCTACACTTC 495469 >seq3 Length=8976907 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/214 (70%), Gaps = 11/214 (5%) Strand=Plus/Plus Query 162742 GAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGACCTTTCCAACT---TGTAGTC 162798 ||||| ||| | ||||| ||||||| || ||||| || |||| | | || ||| | Sbjct 715733 GAAGCCGCATATGTTGATTAGTGGTTATACAATGGCGGTCCTTACGAGCTAATTGTTCTA 715792 Query 162799 TTC--CACTTCCTTATCGGAATCACAGCATACTG--TGG-TCGTCAGTGGGAACTTTCTT 162853 ||| |||||| | | || | ||| | || ||| |||| ||||||||||| || Sbjct 715793 TTCTACACTTCTTAMTTGGTGT---AGCTTGCTACATGGATCGTGAGTGGGAACTTAGTT 715849 Query 162854 ACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCAT 162913 ||| | ||||||| ||||||||| ||||||||| || || || || | || || Sbjct 715850 TCCGTCTGGGTATGCATCCTTGGATTGCTGTTGCATATTCAGCTCCTGTWGCAGCTGCTA 715909 Query 162914 TCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGG 162947 ||||| || ||| |||| | | | |||||||| Sbjct 715910 CTGCTGTTTTATTGATCTACCTTATTGGTCAAGG 715943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553084661728800