Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17]
20 sequences; 136,670,443 total letters
Query= NC_019443.1
Length=172879
Score E
Sequences producing significant alignments: (Bits) Value
seq2 132 5e-26
seq8 109 6e-19
seq6 104 3e-17
seq7 86.0 7e-12
seq3 84.2 2e-11
>seq2
Length=11374105
Score = 132 bits (146), Expect = 5e-26
Identities = 127/163 (78%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 162832 GGTCGTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATAC 162891
|||||| |||||||||| || ||| || ||||||||||||||||| |||||||||
Sbjct 4329613 GGTCGTGAGTGGGAACTAAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGTTGCATAT 4329672
Query 162892 TCTGCACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCT 162951
|| || || ||| | || || ||||| |||||| |||| ||| | |||||||| |
Sbjct 4329673 TCAGCTCCTGTAGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGT 4329732
Query 162952 TTCTCTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACT 162994
|| ||||| | |||||||| || |||||||||||||| ||||
Sbjct 4329733 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACT 4329775
>seq8
Length=7641483
Score = 109 bits (120), Expect = 6e-19
Identities = 127/170 (75%), Gaps = 6/170 (4%)
Strand=Plus/Plus
Query 163324 ACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGACG---CAGGT 163380
|||||||| |||||||| |||| |||| | || ||||||||| | |||||| | ||
Sbjct 525094 ACTATGGCTTTCAACCTAAACGATTTCCATTTTAACCAATCCATAGTTGACAATCCGAGT 525153
Query 163381 GGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTT 163440
|| || ||| || |||| | |||||| | ||| || ||||||||||||||
Sbjct 525154 CGT---GTTATTAATATTTGGACTGATATCATCAACCATGCTAATCTTGGTATGGAAGTG 525210
Query 163441 ATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCTGCTGA 163490
||||| || ||||||||| |||||||||| || ||| | ||||| | |||
Sbjct 525211 ATGCATGAACGTAATGCTTACAACTTCCCTCTAGACTTAGCTGCAGTTGA 525260
>seq6
Length=8045491
Score = 104 bits (114), Expect = 3e-17
Identities = 117/156 (75%), Gaps = 3/156 (2%)
Strand=Plus/Plus
Query 162916 GCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGT 162975
||||| |||||| |||| ||| | |||||||| ||| ||||| | || |||| ||
Sbjct 2591565 GCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTTTCTGATGGTTTGTCTCTAGGA 2591624
Query 162976 ATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCAC 163035
||||||||||| || |||| ||| | || ||| | |||| | ||||||| ||||||
Sbjct 2591625 ATTTCTGGTACATTCAACTTCATAATTGTATTCAAGACAGAAC---ACATCCTTATGCAC 2591681
Query 163036 CCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGT 163071
|| ||||| ||| | || || || ||||||||| ||
Sbjct 2591682 CCATTCCACATGTTAGGCGTAGCTGGTGTATTCTGT 2591717
>seq7
Length=7914316
Score = 86.0 bits (94), Expect = 7e-12
Identities = 86/111 (77%), Gaps = 1/111 (1%)
Strand=Plus/Minus
Query 162698 TTCCTAGTTCAAATGCTATTGGTCTTCACTTCT-ATCCTATCTGGGAAGCAGCAACTCTT 162756
|||||| ||| ||||||||| | || || | |||| |||||||||||||||||| ||
Sbjct 495579 TTCCTACTTCTGCAGCTATTGGTTTGCATTTTTTATCCAATCTGGGAAGCAGCAACTGTT 495520
Query 162757 GATGAGTGGTTGTATAATGGTGGACCTTTCCAACTTGTAGTCTTCCACTTC 162807
|||||||||| || |||||||| |||| | || | | || | ||||||
Sbjct 495519 GATGAGTGGTAATACAATGGTGGTCCTTACGAAYTAATCGTTCTACACTTC 495469
>seq3
Length=8976907
Score = 84.2 bits (92), Expect = 2e-11
Identities = 149/214 (70%), Gaps = 11/214 (5%)
Strand=Plus/Plus
Query 162742 GAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGACCTTTCCAACT---TGTAGTC 162798
||||| ||| | ||||| ||||||| || ||||| || |||| | | || ||| |
Sbjct 715733 GAAGCCGCATATGTTGATTAGTGGTTATACAATGGCGGTCCTTACGAGCTAATTGTTCTA 715792
Query 162799 TTC--CACTTCCTTATCGGAATCACAGCATACTG--TGG-TCGTCAGTGGGAACTTTCTT 162853
||| |||||| | | || | ||| | || ||| |||| ||||||||||| ||
Sbjct 715793 TTCTACACTTCTTAMTTGGTGT---AGCTTGCTACATGGATCGTGAGTGGGAACTTAGTT 715849
Query 162854 ACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCAT 162913
||| | ||||||| ||||||||| ||||||||| || || || || | || ||
Sbjct 715850 TCCGTCTGGGTATGCATCCTTGGATTGCTGTTGCATATTCAGCTCCTGTWGCAGCTGCTA 715909
Query 162914 TCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGG 162947
||||| || ||| |||| | | | ||||||||
Sbjct 715910 CTGCTGTTTTATTGATCTACCTTATTGGTCAAGG 715943
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 553084661728800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |