Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq7 230 4e-55 seq19 95.1 2e-14 >seq7 Length=7914316 Score = 230 bits (254), Expect = 4e-55 Identities = 575/866 (66%), Gaps = 25/866 (3%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || || || | ||||| |||||||| ||||| |||| | |||||| ||| Sbjct 1958631 CTGGTACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGGGAGATGAGCTC 1958690 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAG 47958 ||| || ||||||||||| | || || | | | |||| | || || Sbjct 1958691 CATCCAGTCGAAGGGGTTGGCGGCGTGGTAGATCTTGGGGTGGCCGAGGGCGAGGAGGAG 1958750 Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGG--TGATGTTCATGCCTATGAGG 48016 | | || |||||| |||||||||| | | |||||||| |||| ||||||| | ||| Sbjct 1958751 GCGGTCGGCGACGAACTCGATGTACTGGGCCATGAGGGCCTGAT--TCATGCCGACGAGC 1958808 Query 48017 GACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 | ||| | || | || || ||| ||| |||| ||||| || | || || Sbjct 1958809 GCGCAGGGGAGGGCGTCGCAGACGAAGTCCCGCTCGATCTCGACGGCGTCGGCGACGATG 1958868 Query 48077 TGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCA 48136 | |||| || | | | ||| ||| ||| | || ||||| | |||||| Sbjct 1958869 GCGCGGAGGCGGTCGTCGGGGAGCTTGGAGCGGAGGAG---GGAGTAGAGGAGGCAGGCG 1958925 Query 48137 AAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGC 48196 ||||| | ||| | ||| ||||| ||| ||||||| ||||||||||| ||| || ||| Sbjct 1958926 AAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGC 1958985 Query 48197 ATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCC 48256 |||| || | || ||||||||||| || || ||| ||| ||||||||||||||| Sbjct 1958986 ATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTGCCGGAGAAGAAGATGCCC 1959045 Query 48257 TCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAG 48316 || || ||||| ||| ||| | ||| |||| || || ||| ||||||| Sbjct 1959046 TCGACGCAGGCGAAGGCGACGAGGCGCTCGGCGAAGGACTCGGAGGAGTC---GATCCAG 1959102 Query 48317 GAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGC 48376 || |||||||| ||||| | ||| || | || || | ||| |||||||| Sbjct 1959103 CGGAGGGCCCAGTCGGCCTTGCGGGCCACGCAGGGGACGGTGTCCACGGCGCGGAAGAGG 1959162 Query 48377 TTCTTGCACTCACCT--GCGTCCGCAACATAGGT----AGTGAGCAGCTTTGCGTACATC 48430 | || | ||| | |||| | ||||| || ||| || | ||||||| Sbjct 1959163 --CGGGCCTTGGCCTCGGAGTCCTTGATGTAGGTCTCCAG-GAGGAGGCT---GTACATC 1959216 Query 48431 TCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACC 48490 || ||||| | ||||| || ||||||||||| ||||||||||| | |||||| ||| Sbjct 1959217 TCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCGCGGGCCTCGGCGACC 1959276 Query 48491 TGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCA 48550 || || || | ||| | | ||| ||||| || || || || || || || Sbjct 1959277 TGGACCTCCTTCATGAAGCGGCCSGCCAGGTTCTCGAGCACGATGCCGTCGGAGGCCGCG 1959336 Query 48551 AAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGC---ATTCCAG 48607 |||||||| ||||| || | | ||| |||||||||| | |||||| | | |||| Sbjct 1959337 AAGAAGGCGAGGACGTGGGTGATGAAGTGGCGCTCGTCGGCGGTGAGGTCCTGCTCCCAG 1959396 Query 48608 CCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTT 48667 | | | ||| | | |||||||| || ||| | |||||||||||||| || || Sbjct 1959397 TGCCGGAGGTCGTGGGAGAGGTCCACCTCCTCCGCCGTCCAGAAGGACGCCTCCGCCTTC 1959456 Query 48668 TTGTACATGCCCCATATGTCCGGATA 48693 |||||||| |||| || | ||| || Sbjct 1959457 TTGTACATCTCCCAGATCTGCGGGTA 1959482 >seq19 Length=3929835 Score = 95.1 bits (104), Expect = 2e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 212948 GTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCT 213007 ||| | ||| || ||||||||||||| || ||||||||| || || ||||| ||| Sbjct 2580451 GTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCGAGGATCTGGCTGGTGGA 2580392 Query 213008 GGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTGCT 213054 ||| ||||||||||| ||||||||||| ||||||||| |||| || Sbjct 2580391 GGCGGTGGGCATGGGGGCCACCAGGAGGGAGTTCCTCACGCCGTTCT 2580345 Score = 87.8 bits (96), Expect = 3e-12 Identities = 94/122 (77%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 213144 TTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTC-CTTGGCCAGCTCGCA 213202 ||||||||||||||||| | ||||| ||||||||| | ||| || ||| | ||| | Sbjct 2580039 TTGCTCACGGGGCTGCCGTCGTAAGTCTCGTAGGGGCCCT-CTCTCTGGGCGATCTCAGA 2579981 Query 213203 GGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGC 213262 || |||| |||||| ||| |||||||| || ||||| || ||||| |||||| ||| Sbjct 2579980 AGAAGCCTTCAGGGCGTGGTAATAGATGGTCTCGAATATTTCGCTGTTCAGCTTCCGGGC 2579921 Query 213263 CT 213264 || Sbjct 2579920 CT 2579919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931532567116800