Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17]
20 sequences; 136,670,443 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq7 143 5e-29
>seq7
Length=7914316
Score = 143 bits (158), Expect = 5e-29
Identities = 378/570 (66%), Gaps = 12/570 (2%)
Strand=Plus/Minus
Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536
|| |||||||||||||||||||| | || |||||| || || ||| | || ||
Sbjct 1959473 ATCTGGGAGATGTACAAGAAGGCGGAGGCGTCCTTCTGGACGGCGGAGGAGGTGGACCTC 1959414
Query 25537 GCCAAGGACAT---GGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAG 25593
|| | ||| | | || | | | | || || ||||||| || || |||
Sbjct 1959413 TCCCACGACCTCCGGCACTGGGAGCAGGACCTCACCGCCGACGAGCGCCACTTCATCACC 1959354
Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653
|||| | || ||||| || ||||| || || || ||| |||||| ||| | |
Sbjct 1959353 CACGTCCTCGCCTTCTTCGCGGCCTCCGACGGCATCGTGCTCGAGAACCTGGCSGGCCGC 1959294
Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713
|||| | ||| || ||| || |||||| |||||||| |||||||| ||||||
Sbjct 1959293 TTCATGAAGGAGGTCCAGGTCGCCGAGGCCCGCGCCTTCTACGGCTTCCAGATCGCCATC 1959234
Query 25714 GAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCC 25773
|| || | ||||| ||| |||| | || ||| ||| ||||| | ||| ||
Sbjct 1959233 GAGAACATCCACTCCGAGATGTACAGCCTCCTCCTGGAGACCTACATCAAGGACTCCGAG 1959174
Query 25774 GAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGG 25833
| | | || || || | ||| | || | | ||| || | | |||||
Sbjct 1959173 GCCAAGGCCCGCCTCTTCCGCGCCGTGGACACCGTCCCCTGCGTGGCCCGCAAGGCCGAC 1959114
Query 25834 TGGGCCATGAAGTGGATCAACAGC-CAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTT 25892
|||||| | |||||| || | | ||| || || |||||| || || |||||
Sbjct 1959113 TGGGCCCTCCGCTGGATCGACTCCTCCGAGTCCTTCGC----CGAGCGCCTCGTCGCCTT 1959058
Query 25893 TGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAG 25950
|| ||| || ||||||||||| ||| ||| || |||| |||||||||||||||||
Sbjct 1959057 CGCCTGC-GTCGAGGGCATCTTCTTCTCCGGCAGCTTCTGCG-CCATCTTCTGGCTCAAG 1959000
Query 25951 CAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGT 26010
|| || ||||||||| || ||| ||||||||||||||| | | ||||||||
Sbjct 1958999 AAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGC 1958940
Query 26011 CTCCACAGAGATTTTGCCTGCCTGCTCTAC 26040
|||||| | || || |||||||| ||||||
Sbjct 1958939 CTCCACTGCGACTTCGCCTGCCTCCTCTAC 1958910
Score = 89.7 bits (98), Expect = 1e-12
Identities = 85/109 (78%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992
|||||||||||||| || ||| |||| |||||| ||||| || || |||||||||
Sbjct 5450764 GCCATCTTCTGGCTGAAAAAGAGGGGGCTCATGCCTGGGCTCACATTCTCAAACGAGCTC 5450705
Query 25993 ATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACA 26041
||| |||||| ||||| |||||| | ||||| || || || || ||||
Sbjct 5450704 ATCTCCAGGGATGAGGGCCTCCACTGTGATTTCGCGTGTCTTCTATACA 5450656
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928844567788800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |