Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq7 143 5e-29 >seq7 Length=7914316 Score = 143 bits (158), Expect = 5e-29 Identities = 378/570 (66%), Gaps = 12/570 (2%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || |||||||||||||||||||| | || |||||| || || ||| | || || Sbjct 1959473 ATCTGGGAGATGTACAAGAAGGCGGAGGCGTCCTTCTGGACGGCGGAGGAGGTGGACCTC 1959414 Query 25537 GCCAAGGACAT---GGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAG 25593 || | ||| | | || | | | | || || ||||||| || || ||| Sbjct 1959413 TCCCACGACCTCCGGCACTGGGAGCAGGACCTCACCGCCGACGAGCGCCACTTCATCACC 1959354 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 |||| | || ||||| || ||||| || || || ||| |||||| ||| | | Sbjct 1959353 CACGTCCTCGCCTTCTTCGCGGCCTCCGACGGCATCGTGCTCGAGAACCTGGCSGGCCGC 1959294 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713 |||| | ||| || ||| || |||||| |||||||| |||||||| |||||| Sbjct 1959293 TTCATGAAGGAGGTCCAGGTCGCCGAGGCCCGCGCCTTCTACGGCTTCCAGATCGCCATC 1959234 Query 25714 GAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCC 25773 || || | ||||| ||| |||| | || ||| ||| ||||| | ||| || Sbjct 1959233 GAGAACATCCACTCCGAGATGTACAGCCTCCTCCTGGAGACCTACATCAAGGACTCCGAG 1959174 Query 25774 GAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGG 25833 | | | || || || | ||| | || | | ||| || | | ||||| Sbjct 1959173 GCCAAGGCCCGCCTCTTCCGCGCCGTGGACACCGTCCCCTGCGTGGCCCGCAAGGCCGAC 1959114 Query 25834 TGGGCCATGAAGTGGATCAACAGC-CAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTT 25892 |||||| | |||||| || | | ||| || || |||||| || || ||||| Sbjct 1959113 TGGGCCCTCCGCTGGATCGACTCCTCCGAGTCCTTCGC----CGAGCGCCTCGTCGCCTT 1959058 Query 25893 TGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAG 25950 || ||| || ||||||||||| ||| ||| || |||| ||||||||||||||||| Sbjct 1959057 CGCCTGC-GTCGAGGGCATCTTCTTCTCCGGCAGCTTCTGCG-CCATCTTCTGGCTCAAG 1959000 Query 25951 CAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGT 26010 || || ||||||||| || ||| ||||||||||||||| | | |||||||| Sbjct 1958999 AAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGC 1958940 Query 26011 CTCCACAGAGATTTTGCCTGCCTGCTCTAC 26040 |||||| | || || |||||||| |||||| Sbjct 1958939 CTCCACTGCGACTTCGCCTGCCTCCTCTAC 1958910 Score = 89.7 bits (98), Expect = 1e-12 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992 |||||||||||||| || ||| |||| |||||| ||||| || || ||||||||| Sbjct 5450764 GCCATCTTCTGGCTGAAAAAGAGGGGGCTCATGCCTGGGCTCACATTCTCAAACGAGCTC 5450705 Query 25993 ATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACA 26041 ||| |||||| ||||| |||||| | ||||| || || || || |||| Sbjct 5450704 ATCTCCAGGGATGAGGGCCTCCACTGTGATTTCGCGTGTCTTCTATACA 5450656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928844567788800