Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq2 152 5e-32 seq11 87.8 2e-12 >seq2 Length=11374105 Score = 152 bits (168), Expect = 5e-32 Identities = 139/174 (80%), Gaps = 1/174 (1%) Strand=Plus/Plus Query 8570 TTGCTTATATGGGTCGTGAATGGGAACTTTCTTACCGCCTTGGCATGCGTCCTTGGATCT 8629 ||||| | ||||||||||| |||||||| || ||| | || |||||||||||||| Sbjct 4329603 TTGCT-ACATGGGTCGTGAGTGGGAACTAAGTTTCCGTTTGGGTATGCGTCCTTGGATTG 4329661 Query 8630 GTGTTGCATACTCTGCTCCTGTTGCCGCTGCTTCTGCTGTATTCCTTGTCTATCCTTTTG 8689 ||||||||| || |||||||| || |||||| ||||||| ||| | |||| ||| ||| Sbjct 4329662 CTGTTGCATATTCAGCTCCTGTAGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTG 4329721 Query 8690 GTCAAGGTTCGTTCTCTGATGGTATGCCTCTTGGTATCTCCGGTACGTTCAACT 8743 ||||||| || ||||||||||||||||| || || || ||||| ||||||| Sbjct 4329722 GTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACT 4329775 >seq11 Length=5849386 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 8601 TTACCGCCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCTCCTGTTGCCGCTGC 8660 || ||| || || || ||||||||||| ||||||||| || |||| ||| | | ||| Sbjct 4649182 TTTCCGTCTGGGTATTCGTCCTTGGATTGCTGTTGCATATTCAGCTCATGTAGTAGTTGC 4649123 Query 8661 TTCTGCTGTATTCCTTGTCTATCCTTTTGGTCAAGGTTCGTTCTCTGATGGTATGCCTCT 8720 ||||| | ||| | |||| ||| ||||||||| || ||||||||||||||||| Sbjct 4649122 AACTGCTTTTTTCTTGATCTACCCTACTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCT 4649063 Query 8721 TGGTATCTCCGGT 8733 || || || ||| Sbjct 4649062 AGGAATTTCTGGT 4649050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516479870880000