Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq8 105 4e-17 >seq8 Length=7641483 Score = 105 bits (116), Expect = 4e-17 Identities = 146/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 474680 GTTTTAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAA-GTAACTGATG 474737 ||||| | ||||||||| |||| || ||| | |||||||| |||| || | | | Sbjct 7582022 GTTTTGACAAAAATGAAAGAAACTGCCGAGG-CTTATCTTGGT-AAGAGTGTTTCGAAAG 7582079 Query 474738 CAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGG 474797 |||| | || |||||||| ||||| ||||| | ||| | || || || |||||||||| Sbjct 7582080 CAGTGGTCACAGTTCCAGCTTATTTCAATGACGCGCAAAGACAGGCTACAAAAGATGCGG 7582139 Query 474798 GAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTG 474857 | |||||| | || ||| |||| ||||| ||||||||||| || || || || || Sbjct 7582140 GGAGAATTTCGGGGCTTGATGTGCAGCGTATCATTAATGAACCCACTGCTGCTGCTCTCT 7582199 Query 474858 CTTATGGTCTTGATAAGAA 474876 ||||||| ||| | || || Sbjct 7582200 CTTATGGGCTTAACAACAA 7582218 Score = 100 bits (110), Expect = 2e-15 Identities = 104/134 (78%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 474744 TTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAA 474803 ||||||| || ||||| ||||||||||| ||| | ||||| |||||||| ||| | | Sbjct 3875901 TTACTGTACCTGCATACTTTAATGATTCCCAAAGGACTGCAACAAAAGATGCCGGACGGA 3875960 Query 474804 TTGCAGGTCTTA-ATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTAT 474862 |||| || |||| ||||||| || || || |||||||| || ||||| | | |||||| Sbjct 3875961 TTGCTGG-CTTAGATGTTTTGCGCATCATCAATGAACCCACTGCAGCTTCGTTGGCTTAT 3876019 Query 474863 GGTCTTGATAAGAA 474876 || |||| ||||| Sbjct 3876020 GGATTTGAAAAGAA 3876033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268178342102960