Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq2 152 6e-32 seq8 120 3e-22 seq3 114 1e-20 seq19 93.3 5e-14 seq11 82.4 8e-11 >seq2 Length=11374105 Score = 152 bits (168), Expect = 6e-32 Identities = 135/169 (80%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 161203 TACATGGGTCGTGAGTGGGAACTTTCTTACCGTCTGGGAATGCGTCCTTGGATTTGCGTA 161262 ||||||||||||||||||||||| || |||| |||| ||||||||||||||| || Sbjct 4329607 TACATGGGTCGTGAGTGGGAACTAAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGTT 4329666 Query 161263 GCATACTCTGCTCCTGTCGCTGCAGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCAA 161322 ||||| || |||||||| || || || | ||| || ||| || |||| ||| | |||||| Sbjct 4329667 GCATATTCAGCTCCTGTAGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCAA 4329726 Query 161323 GGTTCTTTCTCTGATGCAATGCCTCTGGGCATCTCTGGTACGTTCAACT 161371 || ||| ||||||| |||||||| || || |||||||| ||||||| Sbjct 4329727 GGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACT 4329775 >seq8 Length=7641483 Score = 120 bits (132), Expect = 3e-22 Identities = 143/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 161674 ATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAACCTGAATGGTTTCAACTTC 161733 || ||||| | ||| | || | || || ||||| |||||||| || | |||| | || Sbjct 525067 ATTTGGTTTATTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGATTTCCATTTT 525126 Query 161734 AACCAGTCTATCGTTGATAGTCAGGGTAAAGTTATCAACACCTGGGCAGACGTTCTCAAC 161793 ||||| || || ||||| | || | || ||||| || | ||| | || | ||||| Sbjct 525127 AACCAATCCATAGTTGACAATCCGAGTCGTGTTATTAATATTTGGACTGATATCATCAAC 525186 Query 161794 CGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGCAATGCTCACAACTTCCCTCTTGAC 161853 | |||| |||||| |||||||||||||| || || |||||| ||||||||||||| ||| Sbjct 525187 CATGCTAATCTTGGTATGGAAGTGATGCATGAACGTAATGCTTACAACTTCCCTCTAGAC 525246 Query 161854 CTTGCTGCTGCTGA 161867 | ||||| | ||| Sbjct 525247 TTAGCTGCAGTTGA 525260 >seq3 Length=8976907 Score = 114 bits (126), Expect = 1e-20 Identities = 174/243 (72%), Gaps = 14/243 (6%) Strand=Plus/Plus Query 161089 GCTATCGGTCTGCACTTCTACCCCATCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTAC 161148 ||||| ||| |||| || |||| | ||||| ||| | | || | ||| | ||| Sbjct 715708 GCTATAGGTTTGCATTTTGACCCAA-----GAAGCCGCATATGTTGATTAGTGGTTATAC 715762 Query 161149 AACGGTGGTCCTTTCCAACTCGTTGTG---TTC--CACTTCCTGATTGGCAT--CTATGC 161201 || || ||||||| | | || |||| ||| |||||| | |||| | || ||| Sbjct 715763 AATGGCGGTCCTTACGAGCTAATTGTTCTATTCTACACTTCTTAMTTGGTGTAGCT-TGC 715821 Query 161202 TTACATGGGTCGTGAGTGGGAACTTTCTTACCGTCTGGGAATGCGTCCTTGGATTTGCGT 161261 | |||||| |||||||||||||||| || ||||||||| |||| |||||||||| || Sbjct 715822 T-ACATGGATCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCATCCTTGGATTGCTGT 715880 Query 161262 AGCATACTCTGCTCCTGTCGCTGCAGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCA 161321 ||||| || |||||||| || || || | ||| || || || |||| | | | ||||| Sbjct 715881 TGCATATTCAGCTCCTGTWGCAGCTGCTACTGCTGTTTTATTGATCTACCTTATTGGTCA 715940 Query 161322 AGG 161324 ||| Sbjct 715941 AGG 715943 >seq19 Length=3929835 Score = 93.3 bits (102), Expect = 5e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 161764 GTTATCAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCAC 161823 ||||| ||||| ||||| || || ||||||||||| ||||| |||||||| ||||| Sbjct 3082454 GTTATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGCAT 3082513 Query 161824 GAGCGCAATGCTCACAACTTCCCTCTTGACCTTGCT 161859 || || ||||||||||||||| |||| ||| | ||| Sbjct 3082514 GAACGTAATGCTCACAACTTCTCTCTAGACTTAGCT 3082549 >seq11 Length=5849386 Score = 82.4 bits (90), Expect = 8e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 161229 TTACCGTCTGGGAATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGC 161288 || ||||||||| || |||||||||||| || ||||| || |||| ||| | | || Sbjct 4649182 TTTCCGTCTGGGTATTCGTCCTTGGATTGCTGTTGCATATTCAGCTCATGTAGTAGTTGC 4649123 Query 161289 GAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCT 161348 | ||| | ||| || |||| ||| |||||||| ||| ||||||| |||||||| Sbjct 4649122 AACTGCTTTTTTCTTGATCTACCCTACTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCT 4649063 Query 161349 GGGCATCTCTGGT 161361 || || |||||| Sbjct 4649062 AGGAATTTCTGGT 4649050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547747063063200