Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq2 123 8e-24 seq6 100 9e-17 seq19 89.7 2e-13 >seq2 Length=11374105 Score = 123 bits (136), Expect = 8e-24 Identities = 132/169 (78%), Gaps = 4/169 (2%) Strand=Plus/Minus Query 18324 TTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGA 18383 ||||||||||| ||| || ||||||||||||||||| ||||| ||||| |||| ||| Sbjct 4329773 TTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCAATAGGG 4329714 Query 18384 TAAA-CGAGAAATACTG-AGAAGGCAGCTGCTACTGGTGCGGAATAAGCAACACAAATCC 18441 || | | ||||| || | || || |||||||||| || || ||||| |||||| ||||| Sbjct 4329713 TAGATCAAGAAA-ACAGCAGTAG-CAGCTGCTACAGGAGCTGAATATGCAACAGCAATCC 4329656 Query 18442 ACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTA 18490 | || |||||||| | | |||| |||||||| | || |||||||| Sbjct 4329655 AAGGACGCATACCCAAACGGAAACTTAGTTCCCACTCACGACCCATGTA 4329607 >seq6 Length=8045491 Score = 100 bits (110), Expect = 9e-17 Identities = 114/151 (75%), Gaps = 4/151 (3%) Strand=Plus/Minus Query 18245 ACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGC 18304 || |||||| || || || || | ||| ||||| || |||||||||| ||||||| | Sbjct 2591717 ACAGAATACACCAGCTACGCCTAACATGTGGAATGGGTGCATAAGGA---TGTGTTCTGT 2591661 Query 18305 TTGGAATACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAA 18364 | |||||| | ||||| ||||| ||||| ||| || |||| || ||||||||| || Sbjct 2591660 CTTGAATACAATTATGAAGTTGAATGTACCAGAAATTCCTAGAGACAAACCATCAGAAAA 2591601 Query 18365 ACTCCCTTGTCCAAAAGGATA-AACGAGAAA 18394 ||| ||||| |||| ||| || | | ||||| Sbjct 2591600 ACTTCCTTGACCAATAGGGTAGATCAAGAAA 2591570 >seq19 Length=3929835 Score = 89.7 bits (98), Expect = 2e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 17829 ATTGAAGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCA 17888 |||| |||||| ||||| | |||||| ||||||||||| || ||||||||||| | ||| Sbjct 3082554 ATTGTAGCTAAGTCTAGAGAGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCA 3082495 Query 17889 AGGTTAGCTCTGTTGAGTACGTCAGCCCATGT 17920 |||||||| | ||||| | |||||||| || Sbjct 3082494 AGGTTAGCACGGTTGATAATATCAGCCCAAGT 3082463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151318364061880