Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq2 120 4e-22 seq8 113 6e-20 seq3 107 2e-18 >seq2 Length=11374105 Score = 120 bits (132), Expect = 4e-22 Identities = 128/169 (76%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 103662 AGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCATCGGAGAACGAACCTTGACCAAAGG 103721 ||||||| || || ||||| || | ||||||| |||| || || |||||||||| | Sbjct 4329775 AGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCAATAG 4329716 Query 103722 GGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGAGCAGAGTATGCGACACAGATCC 103781 |||||| |||||| || || | ||||| || |||||||| || ||||| ||| |||| Sbjct 4329715 GGTAGATCAAGAAAACAGCAGTAGCAGCTGCTACAGGAGCTGAATATGCAACAGCAATCC 4329656 Query 103782 AGGGGCGCATGCCCAGACGGTAGGACAATTCCCACTCACGTCCCATATA 103830 | || ||||| |||| |||| | | |||||||||||| ||||| || Sbjct 4329655 AAGGACGCATACCCAAACGGAAACTTAGTTCCCACTCACGACCCATGTA 4329607 >seq8 Length=7641483 Score = 113 bits (124), Expect = 6e-20 Identities = 139/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 103172 GCAGCAAGGTCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTCCATACCCAGA 103231 ||||| | ||| || |||||||||| ||| ||||| || ||||| ||||||||||| ||| Sbjct 525254 GCAGCTAAGTCTAGAGGGAAGTTGTAAGCATTACGTTCATGCATCACTTCCATACCAAGA 525195 Query 103232 CCAGCGCGGTTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACCATCAAGGATG 103291 ||| |||||| | || | ||| | || | ||||||| | || |||| ||| Sbjct 525194 TTAGCATGGTTGATGATATCAGTCCAAATATTAATAACACGACTCGGATTGTCAACTATG 525135 Query 103292 GACTGGTTGAAGTTGAATCCGTTCAGGTTGAACGCCATGGTGCTAACACCAAGTGCGGTG 103351 || ||||| || | ||| |||| |||||||| ||||| || |||| ||| | || | Sbjct 525134 GATTGGTTAAAATGGAAATCGTTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAATA 525075 Query 103352 AACCAGATAC 103361 ||||| |||| Sbjct 525074 AACCAAATAC 525065 >seq3 Length=8976907 Score = 107 bits (118), Expect = 2e-18 Identities = 154/213 (72%), Gaps = 9/213 (4%) Strand=Plus/Minus Query 103709 CCTTGACCAAAGGGGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGAGCAGAGTAT 103768 |||||||||| |||||| ||| || || || | ||||| || |||||||| || ||| Sbjct 715943 CCTTGACCAATAAGGTAGATCAATAAAACAGCAGTAGCAGCTGCWACAGGAGCTGAATAT 715884 Query 103769 GCGACACAGATCCAGGGGCGCATGCCCAGACGGTAGGACAATTCCCACTCACGTCCCATA 103828 || ||| ||||| || |||| ||||||||| | | |||||||||||| |||| Sbjct 715883 GCAACAGCAATCCAAGGATGCATACCCAGACGGAAACTAAGTTCCCACTCACGATCCATG 715824 Query 103829 TATGCATAG--ATGCCAATGAGGAAGTG--GAATACTACA---AGTTGGAAAGGACCACC 103881 || ||| || | |||| | |||||| ||||| ||| || | | ||||||| || Sbjct 715823 TA-GCA-AGCTACACCAAKTAAGAAGTGTAGAATAGAACAATTAGCTCGTAAGGACCGCC 715766 Query 103882 GTTATACAGCCACTCATCAAGAGATGCTGCTTC 103914 || || | ||||| ||||| | |||| ||||| Sbjct 715765 ATTGTATAACCACTAATCAACATATGCGGCTTC 715733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633513441621600