Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17]
20 sequences; 136,670,443 total letters
Query= NC_020837.1
Length=198013
Score E
Sequences producing significant alignments: (Bits) Value
seq2 120 4e-22
seq8 113 6e-20
seq3 107 2e-18
>seq2
Length=11374105
Score = 120 bits (132), Expect = 4e-22
Identities = 128/169 (76%), Gaps = 0/169 (0%)
Strand=Plus/Minus
Query 103662 AGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCATCGGAGAACGAACCTTGACCAAAGG 103721
||||||| || || ||||| || | ||||||| |||| || || |||||||||| |
Sbjct 4329775 AGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCAATAG 4329716
Query 103722 GGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGAGCAGAGTATGCGACACAGATCC 103781
|||||| |||||| || || | ||||| || |||||||| || ||||| ||| ||||
Sbjct 4329715 GGTAGATCAAGAAAACAGCAGTAGCAGCTGCTACAGGAGCTGAATATGCAACAGCAATCC 4329656
Query 103782 AGGGGCGCATGCCCAGACGGTAGGACAATTCCCACTCACGTCCCATATA 103830
| || ||||| |||| |||| | | |||||||||||| ||||| ||
Sbjct 4329655 AAGGACGCATACCCAAACGGAAACTTAGTTCCCACTCACGACCCATGTA 4329607
>seq8
Length=7641483
Score = 113 bits (124), Expect = 6e-20
Identities = 139/190 (73%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 103172 GCAGCAAGGTCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTCCATACCCAGA 103231
||||| | ||| || |||||||||| ||| ||||| || ||||| ||||||||||| |||
Sbjct 525254 GCAGCTAAGTCTAGAGGGAAGTTGTAAGCATTACGTTCATGCATCACTTCCATACCAAGA 525195
Query 103232 CCAGCGCGGTTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACCATCAAGGATG 103291
||| |||||| | || | ||| | || | ||||||| | || |||| |||
Sbjct 525194 TTAGCATGGTTGATGATATCAGTCCAAATATTAATAACACGACTCGGATTGTCAACTATG 525135
Query 103292 GACTGGTTGAAGTTGAATCCGTTCAGGTTGAACGCCATGGTGCTAACACCAAGTGCGGTG 103351
|| ||||| || | ||| |||| |||||||| ||||| || |||| ||| | || |
Sbjct 525134 GATTGGTTAAAATGGAAATCGTTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAATA 525075
Query 103352 AACCAGATAC 103361
||||| ||||
Sbjct 525074 AACCAAATAC 525065
>seq3
Length=8976907
Score = 107 bits (118), Expect = 2e-18
Identities = 154/213 (72%), Gaps = 9/213 (4%)
Strand=Plus/Minus
Query 103709 CCTTGACCAAAGGGGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGAGCAGAGTAT 103768
|||||||||| |||||| ||| || || || | ||||| || |||||||| || |||
Sbjct 715943 CCTTGACCAATAAGGTAGATCAATAAAACAGCAGTAGCAGCTGCWACAGGAGCTGAATAT 715884
Query 103769 GCGACACAGATCCAGGGGCGCATGCCCAGACGGTAGGACAATTCCCACTCACGTCCCATA 103828
|| ||| ||||| || |||| ||||||||| | | |||||||||||| ||||
Sbjct 715883 GCAACAGCAATCCAAGGATGCATACCCAGACGGAAACTAAGTTCCCACTCACGATCCATG 715824
Query 103829 TATGCATAG--ATGCCAATGAGGAAGTG--GAATACTACA---AGTTGGAAAGGACCACC 103881
|| ||| || | |||| | |||||| ||||| ||| || | | ||||||| ||
Sbjct 715823 TA-GCA-AGCTACACCAAKTAAGAAGTGTAGAATAGAACAATTAGCTCGTAAGGACCGCC 715766
Query 103882 GTTATACAGCCACTCATCAAGAGATGCTGCTTC 103914
|| || | ||||| ||||| | |||| |||||
Sbjct 715765 ATTGTATAACCACTAATCAACATATGCGGCTTC 715733
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633513441621600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |