Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq2 107 6e-19 seq3 89.7 2e-13 >seq2 Length=11374105 Score = 107 bits (118), Expect = 6e-19 Identities = 129/174 (74%), Gaps = 1/174 (1%) Strand=Plus/Minus Query 21958 AGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCAAACG 22017 ||||||| || || || || || | |||||| ||||||||||| || || |||| | Sbjct 4329775 AGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCAATAG 4329716 Query 22018 GATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGATCC 22077 | || | | ||| |||||||| ||||| || |||||||| || || |||||| |||| Sbjct 4329715 GGTAGATCAAGAAAACAGCAGTAGCAGCTGCTACAGGAGCTGAATATGCAACAGCAATCC 4329656 Query 22078 AGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCAA 22131 | || | ||| || | || | || ||||||||||| || ||||||| ||||| Sbjct 4329655 AAGGACGCATACCCAAACGGAAACTTAGTTCCCACTCACGACCCATGT-AGCAA 4329603 >seq3 Length=8976907 Score = 89.7 bits (98), Expect = 2e-13 Identities = 127/175 (73%), Gaps = 7/175 (4%) Strand=Plus/Minus Query 22029 AACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGATCCAGGGCCTCATC 22088 || |||||||| ||||| || |||||||| || || |||||| ||||| || ||| Sbjct 715919 AAAACAGCAGTAGCAGCTGCWACAGGAGCTGAATATGCAACAGCAATCCAAGGATGCATA 715860 Query 22089 CCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCAA-AGACGCCAATGAGGAA 22147 || || || | |||||||||||||| || |||||| ||||| || |||| | ||| Sbjct 715859 CCCAGACGGAAACTAAGTTCCCACTCACGATCCATGT-AGCAAGCTACACCAAKTAAGAA 715801 Query 22148 GTG--GAAT---ACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCATTCATCAA 22197 ||| |||| || | || | | | |||||||| ||||| | ||| | ||||| Sbjct 715800 GTGTAGAATAGAACAATTAGCTCGTAAGGACCGCCATTGTATAACCACTAATCAA 715746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146207965275600