Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17]
20 sequences; 136,670,443 total letters
Query= NC_020838.1
Length=45728
Score E
Sequences producing significant alignments: (Bits) Value
seq2 107 6e-19
seq3 89.7 2e-13
>seq2
Length=11374105
Score = 107 bits (118), Expect = 6e-19
Identities = 129/174 (74%), Gaps = 1/174 (1%)
Strand=Plus/Minus
Query 21958 AGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCAAACG 22017
||||||| || || || || || | |||||| ||||||||||| || || |||| |
Sbjct 4329775 AGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCAATAG 4329716
Query 22018 GATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGATCC 22077
| || | | ||| |||||||| ||||| || |||||||| || || |||||| ||||
Sbjct 4329715 GGTAGATCAAGAAAACAGCAGTAGCAGCTGCTACAGGAGCTGAATATGCAACAGCAATCC 4329656
Query 22078 AGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCAA 22131
| || | ||| || | || | || ||||||||||| || ||||||| |||||
Sbjct 4329655 AAGGACGCATACCCAAACGGAAACTTAGTTCCCACTCACGACCCATGT-AGCAA 4329603
>seq3
Length=8976907
Score = 89.7 bits (98), Expect = 2e-13
Identities = 127/175 (73%), Gaps = 7/175 (4%)
Strand=Plus/Minus
Query 22029 AACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGATCCAGGGCCTCATC 22088
|| |||||||| ||||| || |||||||| || || |||||| ||||| || |||
Sbjct 715919 AAAACAGCAGTAGCAGCTGCWACAGGAGCTGAATATGCAACAGCAATCCAAGGATGCATA 715860
Query 22089 CCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCAA-AGACGCCAATGAGGAA 22147
|| || || | |||||||||||||| || |||||| ||||| || |||| | |||
Sbjct 715859 CCCAGACGGAAACTAAGTTCCCACTCACGATCCATGT-AGCAAGCTACACCAAKTAAGAA 715801
Query 22148 GTG--GAAT---ACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCATTCATCAA 22197
||| |||| || | || | | | |||||||| ||||| | ||| | |||||
Sbjct 715800 GTGTAGAATAGAACAATTAGCTCGTAAGGACCGCCATTGTATAACCACTAATCAA 715746
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 146207965275600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |