Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq19 111 8e-20 >seq19 Length=3929835 Score = 111 bits (122), Expect = 8e-20 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 26065 ACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAA 26124 |||||||||||| |||||||||||||| || || | ||||| |||||||| || ||| Sbjct 2578438 ACCTTTTCTTTTCCCTCCACCTTGATCAACATACCGAGCAGTGTCATTGAAGACCCGCAA 2578379 Query 26125 CATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCT 26184 ||||||||| | ||| | || ||||| || | | | || | || || | || Sbjct 2578378 CATTGGAACAATGCCATTAGATGTACCGTTCGTTCCACGGATATAACTGCCAGTTGCTCG 2578319 Query 26185 AATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTGA 26244 ||||| ||| || || ||||||||| ||||| |||| ||| | || || || Sbjct 2578318 AATATTATGAACAGAAACACCGATTCCTCCAGCAGATTTGCTTATAACCGCGCATTCCTT 2578259 Query 26245 AACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCAT 26283 | ||| || ||||||||| ||||||||| ||||||| Sbjct 2578258 CAATGTGTCATAAATTCCTTCAATGCTATCATCTTTCAT 2578220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253039938321500