Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq2 120 4e-22 seq1 116 4e-21 seq19 84.2 3e-11 >seq2 Length=11374105 Score = 120 bits (132), Expect = 4e-22 Identities = 128/169 (76%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 124536 AGTTGAAAGTACCTGAGATACCAAGTGGCATACCATCAGAGAATGAACCCTGACCAAATG 124595 ||||||||||||| || || || || |||||||||||||| || || ||||||| | Sbjct 4329775 AGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCAATAG 4329716 Query 124596 GGTATACTAAGAATACAGCGAATGCAGCAGATACTGGTGCTGAATAAGCAACACAGATCC 124655 |||| | ||||| ||||| ||||| | ||| || |||||||| |||||| |||| Sbjct 4329715 GGTAGATCAAGAAAACAGCAGTAGCAGCTGCTACAGGAGCTGAATATGCAACAGCAATCC 4329656 Query 124656 AAGGACGCATTCCTAATCTGTATGATAGTTCCCACTGTCTTCCCATGTA 124704 |||||||||| || || | | | ||||||||||| | |||||||| Sbjct 4329655 AAGGACGCATACCCAAACGGAAACTTAGTTCCCACTCACGACCCATGTA 4329607 >seq1 Length=14772968 Score = 116 bits (128), Expect = 4e-21 Identities = 150/205 (73%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 139317 TGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGT 139376 || || ||||||||||| || ||||||||||| || | || |||||||| || || || Sbjct 2133693 TGAGCAGTGCAGATGTTGCTTGTTGCTTTGTCCCTACGGATGTGCTGCTCCCTCGTCTGC 2133634 Query 139377 AGTGCTAATCTGTATGCAGGATTGCCTTCGCTGTC--CACTGACTGACCTACAATTCTGC 139434 | ||| | || | ||||| || || | ||| ||||||| ||| | || || | Sbjct 2133633 ATTGCCATTCGGAGAGCAGGCTTCCCAGTGGAGTCGACACTGAC--ACCGATGATCCTCC 2133576 Query 139435 CAGGTATCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGACCTCCGT 139494 |||| ||| | | ||| |||| | || ||||| ||||| ||||| || |||||||||| Sbjct 2133575 CAGGCATCATCCGCTTGTACTCCTGTGAGGTTGCCAAGAAGGCAGCGTGGGGACCTCCGT 2133516 Query 139495 ATCCCATAGGAATACCAAACCTTTG 139519 ||||||| |||| || ||||| || Sbjct 2133515 ATCCCATTGGAACGCCGAACCTCTG 2133491 >seq19 Length=3929835 Score = 84.2 bits (92), Expect = 3e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 124049 GCTAGGTCTAGTGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCCAAGTTT 124108 |||| |||||| | ||||||||| ||||| | ||||||||||||||||||||| | ||| Sbjct 3082548 GCTAAGTCTAGAGAGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 3082489 Query 124109 GCTCTGTTTAGAACATCACCCCATGT 124134 || | ||| | || |||| |||| || Sbjct 3082488 GCACGGTTGATAATATCAGCCCAAGT 3082463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578998255250400