Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq2 134 2e-26 seq6 120 4e-22 >seq2 Length=11374105 Score = 134 bits (148), Expect = 2e-26 Identities = 131/169 (78%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 27221 AGTTAAAAGTACCAGAGATACCAAGAGGCATAGCATCGGAGAAAGAACCTTGACCGAAAG 27280 |||| ||||||||||| || || ||||||||| |||| || ||| |||||||| | || Sbjct 4329775 AGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCAATAG 4329716 Query 27281 GATAGACGAGGAATACTGCACTCGCAGCAGCGACTGGAGCAGAATATGCTACACAGATCC 27340 | |||| | ||| || ||| | ||||| || || ||||| |||||||| ||| |||| Sbjct 4329715 GGTAGATCAAGAAAACAGCAGTAGCAGCTGCTACAGGAGCTGAATATGCAACAGCAATCC 4329656 Query 27341 ATGGACGCATACCTAAACGATATGAGAGTTCCCACTCACGTCCCATATA 27389 | ||||||||||| ||||| | |||||||||||||| ||||| || Sbjct 4329655 AAGGACGCATACCCAAACGGAAACTTAGTTCCCACTCACGACCCATGTA 4329607 >seq6 Length=8045491 Score = 120 bits (132), Expect = 4e-22 Identities = 121/157 (77%), Gaps = 3/157 (2%) Strand=Plus/Minus Query 27144 ACCGAATACCCCAGCAACACCGAGCATGTGGAACGGGTGCATAAGGATATTGTGTTCTGC 27203 || |||||| ||||| || || | ||||||||| ||||||||||||| ||||||||| Sbjct 2591717 ACAGAATACACCAGCTACGCCTAACATGTGGAATGGGTGCATAAGGA---TGTGTTCTGT 2591661 Query 27204 CTGGAATACAAGCATGTAGTTAAAAGTACCAGAGATACCAAGAGGCATAGCATCGGAGAA 27263 || |||||||| ||| |||| || |||||||| || || |||| || | |||| || || Sbjct 2591660 CTTGAATACAATTATGAAGTTGAATGTACCAGAAATTCCTAGAGACAAACCATCAGAAAA 2591601 Query 27264 AGAACCTTGACCGAAAGGATAGACGAGGAATACTGCA 27300 | |||||||| | ||| |||| | ||| || ||| Sbjct 2591600 ACTTCCTTGACCAATAGGGTAGATCAAGAAAACAGCA 2591564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665494233626400