Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq3 125 9e-24 seq7 122 1e-22 >seq3 Length=8976907 Score = 125 bits (138), Expect = 9e-24 Identities = 230/335 (69%), Gaps = 4/335 (1%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || || || |||||||| || || ||| |||||| || ||||| || |||||| ||| Sbjct 5069638 CCCGGAACTGGAAAGACACTACTTGCCAAAGCCATTGCCGGTGAGGCAGGTGTCCCCTTC 5069697 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || | || | | | || || |||||||||||||| || || || ||||||| Sbjct 5069698 TTCTCGATTTCAGGGTCTGAATTCGTAGAGATGTTTGTTGGAGTAGGAGCTTCAAGGGTT 5069757 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATT 175494 || || ||||| | | || || ||| || ||||| || || ||||||| ||| Sbjct 5069758 CGTGACCTCTTCAAGAAGGCTAAAGAGAATGCTCCGTGTATCGTGTTTGTTGATGAAATT 5069817 Query 175495 GATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAAC 175552 ||||| || |||| ||| | | |||| | | | | | ||||| || ||||| | Sbjct 5069818 GATGCCGTCGGCAGGCAGAGGGGAACTGGCATTGGAGGGGGG--AATGATGAAAGAGAGC 5069875 Query 175553 AAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTGG 175612 |||| | |||||||| || || ||||||||||| ||||| | |||||||| | | Sbjct 5069876 AAACCCTCAATCAACTTCTGACAGAGATGGATGGTTTTGAAGGCAACACTGGCATCATCG 5069935 Query 175613 TTATTGCGGCCACTAATCGCGTGGATATCCTTGAT 175647 | ||||| ||||| || | | || ||||| ||| Sbjct 5069936 TAATTGCCGCCACAAACAGGGCAGACATCCTAGAT 5069970 >seq7 Length=7914316 Score = 122 bits (134), Expect = 1e-22 Identities = 117/150 (78%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 65068 TCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCA 65127 ||||||||||||||||| | || || || || || ||||| |||||||||||||| Sbjct 1959083 TCCTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCCGGCAGC 1959024 Query 65128 TTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAAT 65187 |||||||| || | ||| | |||||||| || |||||||| ||||| |||||| || Sbjct 1959023 TTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAAC 1958964 Query 65188 GAACTTATTTCCCGAGATGAGGGTCTCCAC 65217 || || || ||||| || ||||| |||||| Sbjct 1958963 GAGCTCATCTCCCGCGACGAGGGCCTCCAC 1958934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596569450857600