Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17]
20 sequences; 136,670,443 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq3 125 9e-24
seq7 122 1e-22
>seq3
Length=8976907
Score = 125 bits (138), Expect = 9e-24
Identities = 230/335 (69%), Gaps = 4/335 (1%)
Strand=Plus/Plus
Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374
|| || || |||||||| || || ||| |||||| || ||||| || |||||| |||
Sbjct 5069638 CCCGGAACTGGAAAGACACTACTTGCCAAAGCCATTGCCGGTGAGGCAGGTGTCCCCTTC 5069697
Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434
|| | || | | | || || |||||||||||||| || || || |||||||
Sbjct 5069698 TTCTCGATTTCAGGGTCTGAATTCGTAGAGATGTTTGTTGGAGTAGGAGCTTCAAGGGTT 5069757
Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATT 175494
|| || ||||| | | || || ||| || ||||| || || ||||||| |||
Sbjct 5069758 CGTGACCTCTTCAAGAAGGCTAAAGAGAATGCTCCGTGTATCGTGTTTGTTGATGAAATT 5069817
Query 175495 GATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAAC 175552
||||| || |||| ||| | | |||| | | | | | ||||| || ||||| |
Sbjct 5069818 GATGCCGTCGGCAGGCAGAGGGGAACTGGCATTGGAGGGGGG--AATGATGAAAGAGAGC 5069875
Query 175553 AAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTGG 175612
|||| | |||||||| || || ||||||||||| ||||| | |||||||| | |
Sbjct 5069876 AAACCCTCAATCAACTTCTGACAGAGATGGATGGTTTTGAAGGCAACACTGGCATCATCG 5069935
Query 175613 TTATTGCGGCCACTAATCGCGTGGATATCCTTGAT 175647
| ||||| ||||| || | | || ||||| |||
Sbjct 5069936 TAATTGCCGCCACAAACAGGGCAGACATCCTAGAT 5069970
>seq7
Length=7914316
Score = 122 bits (134), Expect = 1e-22
Identities = 117/150 (78%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 65068 TCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCA 65127
||||||||||||||||| | || || || || || ||||| ||||||||||||||
Sbjct 1959083 TCCTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCCGGCAGC 1959024
Query 65128 TTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAAT 65187
|||||||| || | ||| | |||||||| || |||||||| ||||| |||||| ||
Sbjct 1959023 TTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAAC 1958964
Query 65188 GAACTTATTTCCCGAGATGAGGGTCTCCAC 65217
|| || || ||||| || ||||| ||||||
Sbjct 1958963 GAGCTCATCTCCCGCGACGAGGGCCTCCAC 1958934
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596569450857600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |