Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq2 102 1e-16 seq6 95.1 1e-14 >seq2 Length=11374105 Score = 102 bits (112), Expect = 1e-16 Identities = 124/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 8378 AGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTGACCAAATG 8437 |||| || ||||||||||| ||||||||||| |||||||| || || ||||||| | Sbjct 4329775 AGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCAATAG 4329716 Query 8438 GATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTACACAGATCC 8497 | || | ||||| || || |||||| | ||| ||||| |||||| ||| |||| Sbjct 4329715 GGTAGATCAAGAAAACAGCAGTAGCAGCTGCTACAGGAGCTGAATATGCAACAGCAATCC 4329656 Query 8498 ATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCCATGTA 8546 | || | |||||| || ||| | || ||||||| | ||||||||| Sbjct 4329655 AAGGACGCATACCCAAACGGAAACTTAGTTCCCACTCACGACCCATGTA 4329607 >seq6 Length=8045491 Score = 95.1 bits (104), Expect = 1e-14 Identities = 115/156 (74%), Gaps = 3/156 (2%) Strand=Plus/Minus Query 8301 ACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGC 8360 || ||| | ||| ||||| ||| ||| ||||| || |||||||| |||| | |||| Sbjct 2591717 ACAGAATACACCAGCTACGCCTAACATGTGGAATGGGTGCATAAGGATGT---GTTCTGT 2591661 Query 8361 TTGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAA 8420 | |||||| | |||||||| || ||||||||||| ||||||| || |||||||| || Sbjct 2591660 CTTGAATACAATTATGAAGTTGAATGTACCAGAAATTCCTAGAGACAAACCATCAGAAAA 2591601 Query 8421 TGAACCCTGACCAAATGGATATACTAAGAACACTGC 8456 || ||||||| || || | ||||| || || Sbjct 2591600 ACTTCCTTGACCAATAGGGTAGATCAAGAAAACAGC 2591565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615862246034400