Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17]
20 sequences; 136,670,443 total letters
Query= NC_020855.1
Length=192497
Score E
Sequences producing significant alignments: (Bits) Value
seq2 102 1e-16
seq6 95.1 1e-14
>seq2
Length=11374105
Score = 102 bits (112), Expect = 1e-16
Identities = 124/169 (73%), Gaps = 0/169 (0%)
Strand=Plus/Minus
Query 8378 AGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTGACCAAATG 8437
|||| || ||||||||||| ||||||||||| |||||||| || || ||||||| |
Sbjct 4329775 AGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCAATAG 4329716
Query 8438 GATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTACACAGATCC 8497
| || | ||||| || || |||||| | ||| ||||| |||||| ||| ||||
Sbjct 4329715 GGTAGATCAAGAAAACAGCAGTAGCAGCTGCTACAGGAGCTGAATATGCAACAGCAATCC 4329656
Query 8498 ATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCCATGTA 8546
| || | |||||| || ||| | || ||||||| | |||||||||
Sbjct 4329655 AAGGACGCATACCCAAACGGAAACTTAGTTCCCACTCACGACCCATGTA 4329607
>seq6
Length=8045491
Score = 95.1 bits (104), Expect = 1e-14
Identities = 115/156 (74%), Gaps = 3/156 (2%)
Strand=Plus/Minus
Query 8301 ACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGC 8360
|| ||| | ||| ||||| ||| ||| ||||| || |||||||| |||| | ||||
Sbjct 2591717 ACAGAATACACCAGCTACGCCTAACATGTGGAATGGGTGCATAAGGATGT---GTTCTGT 2591661
Query 8361 TTGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAA 8420
| |||||| | |||||||| || ||||||||||| ||||||| || |||||||| ||
Sbjct 2591660 CTTGAATACAATTATGAAGTTGAATGTACCAGAAATTCCTAGAGACAAACCATCAGAAAA 2591601
Query 8421 TGAACCCTGACCAAATGGATATACTAAGAACACTGC 8456
|| ||||||| || || | ||||| || ||
Sbjct 2591600 ACTTCCTTGACCAATAGGGTAGATCAAGAAAACAGC 2591565
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 615862246034400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |