Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq2 140 4e-28 seq8 107 2e-18 seq3 98.7 1e-15 seq19 82.4 9e-11 seq7 82.4 9e-11 >seq2 Length=11374105 Score = 140 bits (154), Expect = 4e-28 Identities = 133/170 (78%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 166095 CTACATGGGTCGTGAGTGGGAACTGTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGT 166154 |||||||||||||||||||||||| || |||| | ||||||||||| ||||| ||| Sbjct 4329606 CTACATGGGTCGTGAGTGGGAACTAAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGT 4329665 Query 166155 TGCTTACTCAGCACCAGTCGCTGCTGCGAGTGCAGTATTCCTAGTATATCCTTTCGGTCA 166214 ||| || ||||| || || || ||||| | ||| || ||| | | || ||| | ||||| Sbjct 4329666 TGCATATTCAGCTCCTGTAGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCA 4329725 Query 166215 AGGTAGTTTCTCTGATGCAATGCCACTCGGAATCTCAGGAACATTCAACT 166264 ||| ||||| ||||||| ||||| || ||||| || || || ||||||| Sbjct 4329726 AGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACT 4329775 >seq8 Length=7641483 Score = 107 bits (118), Expect = 2e-18 Identities = 124/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 166594 ACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGT 166653 || ||||| |||||||| |||| |||| | || ||||| ||||| |||| || | || Sbjct 525094 ACTATGGCTTTCAACCTAAACGATTTCCATTTTAACCAATCCATAGTTGACAATCCGAGT 525153 Query 166654 CGTGTGTTGAACACCTGGGCAGATGTTCTTAACCGCGCTGGTCTCGGTATGGAAGTTATG 166713 ||||| | || | ||| | ||| | | |||| ||| ||| ||||||||||| ||| Sbjct 525154 CGTGTTATTAATATTTGGACTGATATCATCAACCATGCTAATCTTGGTATGGAAGTGATG 525213 Query 166714 CATGAGCGTAACGCACACAACTTCCCCCTCGACCTCGCTGCTGCTGA 166760 ||||| ||||| || |||||||||| || ||| | ||||| | ||| Sbjct 525214 CATGAACGTAATGCTTACAACTTCCCTCTAGACTTAGCTGCAGTTGA 525260 >seq3 Length=8976907 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/211 (71%), Gaps = 5/211 (2%) Strand=Plus/Plus Query 166012 GAAGCCGCATCGCTTGACGAATGGCTCTATAACGGTGGTCCTTTCCAACTGGTTGTC--- 166068 |||||||||| |||| | ||| | || || || ||||||| | | || |||| Sbjct 715733 GAAGCCGCATATGTTGATTAGTGGTTATACAATGGCGGTCCTTACGAGCTAATTGTTCTA 715792 Query 166069 TTC--CACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACTGTCTTACC 166126 ||| |||||| | |||| | | |||||||| ||||||||||||||| || || Sbjct 715793 TTCTACACTTCTTAMTTGGTGTAGCTTGCTACATGGATCGTGAGTGGGAACTTAGTTTCC 715852 Query 166127 GTCTAGGTATGCGTCCATGGATCTGTGTTGCTTACTCAGCACCAGTCGCTGCTGCGAGTG 166186 |||| ||||||| ||| ||||| |||||| || ||||| || || || ||||| | || Sbjct 715853 GTCTGGGTATGCATCCTTGGATTGCTGTTGCATATTCAGCTCCTGTWGCAGCTGCTACTG 715912 Query 166187 CAGTATTCCTAGTATATCCTTTCGGTCAAGG 166217 | || || | | || | | | |||||||| Sbjct 715913 CTGTTTTATTGATCTACCTTATTGGTCAAGG 715943 >seq19 Length=3929835 Score = 82.4 bits (90), Expect = 9e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 166655 GTGTGTTGAACACCTGGGCAGATGTTCTTAACCGCGCTGGTCTCGGTATGGAAGTTATGC 166714 |||| | ||||| ||||| ||| || | ||||| ||| || |||||||||||||||| Sbjct 3082452 GTGTTATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGC 3082511 Query 166715 ATGAGCGTAACGCACACAACTTCCCCCTCGACCTCGCT 166752 |||| ||||| || ||||||||| | || ||| | ||| Sbjct 3082512 ATGAACGTAATGCTCACAACTTCTCTCTAGACTTAGCT 3082549 >seq7 Length=7914316 Score = 82.4 bits (90), Expect = 9e-11 Identities = 82/106 (77%), Gaps = 3/106 (3%) Strand=Plus/Plus Query 166441 CAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTCGGTCGTTTGATCTTC 166500 ||||| |||| ||| ||||| || ||||| |||| ||||| ||| || || ||||||||| Sbjct 208910 CAAGAGGAAGGAACCTACAATATTGTAGCTGCTCTTGGTTGCTTGGGCCGATTGATCTTC 208969 Query 166501 C---AATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCC 166543 | |||| ||| ||||||||||||| | || ||||| |||| Sbjct 208970 CCAAAATATGCTATTTTCAACAACTCCCATCCTTTACACTTGTTCC 209015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561247859688000