Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17]
20 sequences; 136,670,443 total letters
Query= NC_020859.1
Length=175430
Score E
Sequences producing significant alignments: (Bits) Value
seq2 140 4e-28
seq8 107 2e-18
seq3 98.7 1e-15
seq19 82.4 9e-11
seq7 82.4 9e-11
>seq2
Length=11374105
Score = 140 bits (154), Expect = 4e-28
Identities = 133/170 (78%), Gaps = 0/170 (0%)
Strand=Plus/Plus
Query 166095 CTACATGGGTCGTGAGTGGGAACTGTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGT 166154
|||||||||||||||||||||||| || |||| | ||||||||||| ||||| |||
Sbjct 4329606 CTACATGGGTCGTGAGTGGGAACTAAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGT 4329665
Query 166155 TGCTTACTCAGCACCAGTCGCTGCTGCGAGTGCAGTATTCCTAGTATATCCTTTCGGTCA 166214
||| || ||||| || || || ||||| | ||| || ||| | | || ||| | |||||
Sbjct 4329666 TGCATATTCAGCTCCTGTAGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCA 4329725
Query 166215 AGGTAGTTTCTCTGATGCAATGCCACTCGGAATCTCAGGAACATTCAACT 166264
||| ||||| ||||||| ||||| || ||||| || || || |||||||
Sbjct 4329726 AGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACT 4329775
>seq8
Length=7641483
Score = 107 bits (118), Expect = 2e-18
Identities = 124/167 (74%), Gaps = 0/167 (0%)
Strand=Plus/Plus
Query 166594 ACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGT 166653
|| ||||| |||||||| |||| |||| | || ||||| ||||| |||| || | ||
Sbjct 525094 ACTATGGCTTTCAACCTAAACGATTTCCATTTTAACCAATCCATAGTTGACAATCCGAGT 525153
Query 166654 CGTGTGTTGAACACCTGGGCAGATGTTCTTAACCGCGCTGGTCTCGGTATGGAAGTTATG 166713
||||| | || | ||| | ||| | | |||| ||| ||| ||||||||||| |||
Sbjct 525154 CGTGTTATTAATATTTGGACTGATATCATCAACCATGCTAATCTTGGTATGGAAGTGATG 525213
Query 166714 CATGAGCGTAACGCACACAACTTCCCCCTCGACCTCGCTGCTGCTGA 166760
||||| ||||| || |||||||||| || ||| | ||||| | |||
Sbjct 525214 CATGAACGTAATGCTTACAACTTCCCTCTAGACTTAGCTGCAGTTGA 525260
>seq3
Length=8976907
Score = 98.7 bits (108), Expect = 1e-15
Identities = 149/211 (71%), Gaps = 5/211 (2%)
Strand=Plus/Plus
Query 166012 GAAGCCGCATCGCTTGACGAATGGCTCTATAACGGTGGTCCTTTCCAACTGGTTGTC--- 166068
|||||||||| |||| | ||| | || || || ||||||| | | || ||||
Sbjct 715733 GAAGCCGCATATGTTGATTAGTGGTTATACAATGGCGGTCCTTACGAGCTAATTGTTCTA 715792
Query 166069 TTC--CACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACTGTCTTACC 166126
||| |||||| | |||| | | |||||||| ||||||||||||||| || ||
Sbjct 715793 TTCTACACTTCTTAMTTGGTGTAGCTTGCTACATGGATCGTGAGTGGGAACTTAGTTTCC 715852
Query 166127 GTCTAGGTATGCGTCCATGGATCTGTGTTGCTTACTCAGCACCAGTCGCTGCTGCGAGTG 166186
|||| ||||||| ||| ||||| |||||| || ||||| || || || ||||| | ||
Sbjct 715853 GTCTGGGTATGCATCCTTGGATTGCTGTTGCATATTCAGCTCCTGTWGCAGCTGCTACTG 715912
Query 166187 CAGTATTCCTAGTATATCCTTTCGGTCAAGG 166217
| || || | | || | | | ||||||||
Sbjct 715913 CTGTTTTATTGATCTACCTTATTGGTCAAGG 715943
>seq19
Length=3929835
Score = 82.4 bits (90), Expect = 9e-11
Identities = 77/98 (79%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 166655 GTGTGTTGAACACCTGGGCAGATGTTCTTAACCGCGCTGGTCTCGGTATGGAAGTTATGC 166714
|||| | ||||| ||||| ||| || | ||||| ||| || ||||||||||||||||
Sbjct 3082452 GTGTTATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGC 3082511
Query 166715 ATGAGCGTAACGCACACAACTTCCCCCTCGACCTCGCT 166752
|||| ||||| || ||||||||| | || ||| | |||
Sbjct 3082512 ATGAACGTAATGCTCACAACTTCTCTCTAGACTTAGCT 3082549
>seq7
Length=7914316
Score = 82.4 bits (90), Expect = 9e-11
Identities = 82/106 (77%), Gaps = 3/106 (3%)
Strand=Plus/Plus
Query 166441 CAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTCGGTCGTTTGATCTTC 166500
||||| |||| ||| ||||| || ||||| |||| ||||| ||| || || |||||||||
Sbjct 208910 CAAGAGGAAGGAACCTACAATATTGTAGCTGCTCTTGGTTGCTTGGGCCGATTGATCTTC 208969
Query 166501 C---AATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCC 166543
| |||| ||| ||||||||||||| | || ||||| ||||
Sbjct 208970 CCAAAATATGCTATTTTCAACAACTCCCATCCTTTACACTTGTTCC 209015
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 561247859688000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |