Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17]
20 sequences; 136,670,443 total letters
Query= NC_020865.1
Length=45730
Score E
Sequences producing significant alignments: (Bits) Value
seq2 107 6e-19
seq3 89.7 2e-13
>seq2
Length=11374105
Score = 107 bits (118), Expect = 6e-19
Identities = 129/174 (74%), Gaps = 1/174 (1%)
Strand=Plus/Plus
Query 41556 TTGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCT 41615
||||| ||||||| || ||||||||||| || | || | || ||| | || |||||
Sbjct 4329603 TTGCT-ACATGGGTCGTGAGTGGGAACTAAGTTTCCGTTTGGGTATGCGTCCTTGGATTG 4329661
Query 41616 TTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTG 41675
|||||| || || |||||||| || ||||| |||||||| ||| | | || || |||
Sbjct 4329662 CTGTTGCATATTCAGCTCCTGTAGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTG 4329721
Query 41676 GACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACT 41729
| || || ||||||||||| |||||| | || || || || || |||||||
Sbjct 4329722 GTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACT 4329775
>seq3
Length=8976907
Score = 89.7 bits (98), Expect = 2e-13
Identities = 127/175 (73%), Gaps = 7/175 (4%)
Strand=Plus/Plus
Query 41490 TTGATGAATGGCTGTACAACGGCGGTCCATTCCAACTCACCGT---ATTC--CACTTCCT 41544
||||| | ||| | ||||| |||||||| | | | || | || |||| |||||| |
Sbjct 715746 TTGATTAGTGGTTATACAATGGCGGTCCTTACGAGCTAATTGTTCTATTCTACACTTCTT 715805
Query 41545 CATTGGCGTCT-TTGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGA 41603
|||| || ||||| |||||| || |||||||||||||| | || || || |||
Sbjct 715806 AMTTGGTGTAGCTTGCT-ACATGGATCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGC 715864
Query 41604 GGCCCTGGATCTTTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTT 41658
|| ||||| |||||| || || |||||||| || ||||| |||||||| ||
Sbjct 715865 ATCCTTGGATTGCTGTTGCATATTCAGCTCCTGTWGCAGCTGCTACTGCTGTTTT 715919
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 146214365274080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |