Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq2 107 6e-19 seq3 89.7 2e-13 >seq2 Length=11374105 Score = 107 bits (118), Expect = 6e-19 Identities = 129/174 (74%), Gaps = 1/174 (1%) Strand=Plus/Plus Query 41556 TTGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCT 41615 ||||| ||||||| || ||||||||||| || | || | || ||| | || ||||| Sbjct 4329603 TTGCT-ACATGGGTCGTGAGTGGGAACTAAGTTTCCGTTTGGGTATGCGTCCTTGGATTG 4329661 Query 41616 TTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTG 41675 |||||| || || |||||||| || ||||| |||||||| ||| | | || || ||| Sbjct 4329662 CTGTTGCATATTCAGCTCCTGTAGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTG 4329721 Query 41676 GACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACT 41729 | || || ||||||||||| |||||| | || || || || || ||||||| Sbjct 4329722 GTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACT 4329775 >seq3 Length=8976907 Score = 89.7 bits (98), Expect = 2e-13 Identities = 127/175 (73%), Gaps = 7/175 (4%) Strand=Plus/Plus Query 41490 TTGATGAATGGCTGTACAACGGCGGTCCATTCCAACTCACCGT---ATTC--CACTTCCT 41544 ||||| | ||| | ||||| |||||||| | | | || | || |||| |||||| | Sbjct 715746 TTGATTAGTGGTTATACAATGGCGGTCCTTACGAGCTAATTGTTCTATTCTACACTTCTT 715805 Query 41545 CATTGGCGTCT-TTGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGA 41603 |||| || ||||| |||||| || |||||||||||||| | || || || ||| Sbjct 715806 AMTTGGTGTAGCTTGCT-ACATGGATCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGC 715864 Query 41604 GGCCCTGGATCTTTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTT 41658 || ||||| |||||| || || |||||||| || ||||| |||||||| || Sbjct 715865 ATCCTTGGATTGCTGTTGCATATTCAGCTCCTGTWGCAGCTGCTACTGCTGTTTT 715919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146214365274080