Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17]
20 sequences; 136,670,443 total letters
Query= NC_020867.1
Length=44892
Score E
Sequences producing significant alignments: (Bits) Value
seq8 102 2e-17
seq6 98.7 3e-16
>seq8
Length=7641483
Score = 102 bits (112), Expect = 2e-17
Identities = 130/179 (73%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 43087 ATTTGGTTCACTTCTCTTGGCGTCAGTACTATGGCGTTTAACTTGAATGGTTTTAACTTT 43146
|||||||| | | || | || | ||||||||||| || ||| | || | ||| | |||
Sbjct 525067 ATTTGGTTTATTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGATTTCCATTTT 525126
Query 43147 AACCAATCACTTGTTGATAATCAGAATCATGTCATCCCTACTTGGGCTGATATTTTGAAT 43206
|||||||| | ||||| |||| || || ||| || || |||| ||||||| | ||
Sbjct 525127 AACCAATCCATAGTTGACAATCCGAGTCGTGTTATTAATATTTGGACTGATATCATCAAC 525186
Query 43207 CGTGCCAACCTTGGCTTTGAGGTGATGCACGAGCGGAATGCACATAACTTCCCGCTTGA 43265
| ||| || ||||| | || |||||||| || || ||||| | |||||||| || ||
Sbjct 525187 CATGCTAATCTTGGTATGGAAGTGATGCATGAACGTAATGCTTACAACTTCCCTCTAGA 525245
>seq6
Length=8045491
Score = 98.7 bits (108), Expect = 3e-16
Identities = 115/155 (74%), Gaps = 3/155 (2%)
Strand=Plus/Plus
Query 42703 ACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGCCTCTT 42762
||||| || ||| | |||| || |||| ||||| |||||| ||||| || ||||
Sbjct 2591562 ACTGCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTTTCTGATGGTTTGTCTCTA 2591621
Query 42763 GGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTCTTATG 42822
|| ||||| ||||| ||||||||||| | || ||| || | |||| |||| ||||||
Sbjct 2591622 GGAATTTCTGGTACATTCAACTTCATAATTGTATTCAAGACAGAAC---ACATCCTTATG 2591678
Query 42823 CATCCTTTCCATATGCTTGGTGTTGCCGGCGTATT 42857
|| || ||||| ||| | || || || || |||||
Sbjct 2591679 CACCCATTCCACATGTTAGGCGTAGCTGGTGTATT 2591713
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 143532765910960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |