Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq8 102 2e-17 seq6 98.7 3e-16 >seq8 Length=7641483 Score = 102 bits (112), Expect = 2e-17 Identities = 130/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 43087 ATTTGGTTCACTTCTCTTGGCGTCAGTACTATGGCGTTTAACTTGAATGGTTTTAACTTT 43146 |||||||| | | || | || | ||||||||||| || ||| | || | ||| | ||| Sbjct 525067 ATTTGGTTTATTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGATTTCCATTTT 525126 Query 43147 AACCAATCACTTGTTGATAATCAGAATCATGTCATCCCTACTTGGGCTGATATTTTGAAT 43206 |||||||| | ||||| |||| || || ||| || || |||| ||||||| | || Sbjct 525127 AACCAATCCATAGTTGACAATCCGAGTCGTGTTATTAATATTTGGACTGATATCATCAAC 525186 Query 43207 CGTGCCAACCTTGGCTTTGAGGTGATGCACGAGCGGAATGCACATAACTTCCCGCTTGA 43265 | ||| || ||||| | || |||||||| || || ||||| | |||||||| || || Sbjct 525187 CATGCTAATCTTGGTATGGAAGTGATGCATGAACGTAATGCTTACAACTTCCCTCTAGA 525245 >seq6 Length=8045491 Score = 98.7 bits (108), Expect = 3e-16 Identities = 115/155 (74%), Gaps = 3/155 (2%) Strand=Plus/Plus Query 42703 ACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGCCTCTT 42762 ||||| || ||| | |||| || |||| ||||| |||||| ||||| || |||| Sbjct 2591562 ACTGCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTTTCTGATGGTTTGTCTCTA 2591621 Query 42763 GGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTCTTATG 42822 || ||||| ||||| ||||||||||| | || ||| || | |||| |||| |||||| Sbjct 2591622 GGAATTTCTGGTACATTCAACTTCATAATTGTATTCAAGACAGAAC---ACATCCTTATG 2591678 Query 42823 CATCCTTTCCATATGCTTGGTGTTGCCGGCGTATT 42857 || || ||||| ||| | || || || || ||||| Sbjct 2591679 CACCCATTCCACATGTTAGGCGTAGCTGGTGTATT 2591713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143532765910960