Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq2 96.9 1e-15 seq6 91.5 4e-14 >seq2 Length=11374105 Score = 96.9 bits (106), Expect = 1e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 26364 AGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGTCCGAAAG 26423 |||| ||||||||||| || || |||||||| |||||| |||||| ||||| || | || Sbjct 4329775 AGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCAATAG 4329716 Query 26424 GATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACAAATATCC 26483 | || | ||||| || || ||| || | || || |||| |||||||||| |||| Sbjct 4329715 GGTAGATCAAGAAAACAGCAGTAGCAGCTGCTACAGGAGCTGAATATGCAACAGCAATCC 4329656 Query 26484 ATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACT 26519 | || | ||| || | | | || ||||||||||| Sbjct 4329655 AAGGACGCATACCCAAACGGAAACTTAGTTCCCACT 4329620 >seq6 Length=8045491 Score = 91.5 bits (100), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 3/156 (2%) Strand=Plus/Minus Query 26287 ACCGAAAACCCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGC 26346 || ||| || ||||| || || ||| |||||||||||||| || | | ||||||| Sbjct 2591717 ACAGAATACACCAGCTACGCCTAACATGTGGAATGGGTGCATAAGGA---TGTGTTCTGT 2591661 Query 26347 TTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAA 26406 | |||||| | || ||||| || |||||||| || || |||| || |||||| ||| Sbjct 2591660 CTTGAATACAATTATGAAGTTGAATGTACCAGAAATTCCTAGAGACAAACCATCAGAAAA 2591601 Query 26407 ACTCCCTTGTCCGAAAGGATAAACTAAGAACACTGC 26442 ||| ||||| || | ||| || | ||||| || || Sbjct 2591600 ACTTCCTTGACCAATAGGGTAGATCAAGAAAACAGC 2591565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147711964918400