Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17]
20 sequences; 136,670,443 total letters
Query= NC_020874.1
Length=46198
Score E
Sequences producing significant alignments: (Bits) Value
seq2 96.9 1e-15
seq6 91.5 4e-14
>seq2
Length=11374105
Score = 96.9 bits (106), Expect = 1e-15
Identities = 115/156 (74%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 26364 AGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGTCCGAAAG 26423
|||| ||||||||||| || || |||||||| |||||| |||||| ||||| || | ||
Sbjct 4329775 AGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCAATAG 4329716
Query 26424 GATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACAAATATCC 26483
| || | ||||| || || ||| || | || || |||| |||||||||| ||||
Sbjct 4329715 GGTAGATCAAGAAAACAGCAGTAGCAGCTGCTACAGGAGCTGAATATGCAACAGCAATCC 4329656
Query 26484 ATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACT 26519
| || | ||| || | | | || |||||||||||
Sbjct 4329655 AAGGACGCATACCCAAACGGAAACTTAGTTCCCACT 4329620
>seq6
Length=8045491
Score = 91.5 bits (100), Expect = 4e-14
Identities = 114/156 (73%), Gaps = 3/156 (2%)
Strand=Plus/Minus
Query 26287 ACCGAAAACCCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGC 26346
|| ||| || ||||| || || ||| |||||||||||||| || | | |||||||
Sbjct 2591717 ACAGAATACACCAGCTACGCCTAACATGTGGAATGGGTGCATAAGGA---TGTGTTCTGT 2591661
Query 26347 TTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAA 26406
| |||||| | || ||||| || |||||||| || || |||| || |||||| |||
Sbjct 2591660 CTTGAATACAATTATGAAGTTGAATGTACCAGAAATTCCTAGAGACAAACCATCAGAAAA 2591601
Query 26407 ACTCCCTTGTCCGAAAGGATAAACTAAGAACACTGC 26442
||| ||||| || | ||| || | ||||| || ||
Sbjct 2591600 ACTTCCTTGACCAATAGGGTAGATCAAGAAAACAGC 2591565
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 147711964918400
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |