Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17]
20 sequences; 136,670,443 total letters
Query= NC_020875.1
Length=182801
Score E
Sequences producing significant alignments: (Bits) Value
seq2 118 1e-21
seq6 100 3e-16
seq8 96.9 4e-15
seq3 89.7 6e-13
seq7 84.2 3e-11
>seq2
Length=11374105
Score = 118 bits (130), Expect = 1e-21
Identities = 124/163 (76%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 155302 GGTCGTCAGTGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGATCTGTGTTGCATAC 155361
|||||| |||||||||| || |||| | || |||||||||||||| |||||||||
Sbjct 4329613 GGTCGTGAGTGGGAACTAAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGTTGCATAT 4329672
Query 155362 TCTGCACCAGTATCTGCTGCGTTCGCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCT 155421
|| || || ||| | ||||| ||||| ||| | | || ||| | |||||||| |
Sbjct 4329673 TCAGCTCCTGTAGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGT 4329732
Query 155422 TTCTCTGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACT 155464
|| ||||||| |||||||| || || ||||||||||| ||||
Sbjct 4329733 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACT 4329775
>seq6
Length=8045491
Score = 100 bits (110), Expect = 3e-16
Identities = 116/156 (74%), Gaps = 3/156 (2%)
Strand=Plus/Plus
Query 155386 GCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGT 155445
||||| ||| | | || ||| | |||||||| ||| ||||||| || |||| ||
Sbjct 2591565 GCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTTTCTGATGGTTTGTCTCTAGGA 2591624
Query 155446 ATCTCTGGTACTTTTAACTATATGTTCGTGTTCCAAGCAGAACACAATATCCTTATGCAC 155505
|| |||||||| || |||| || | || ||| | ||||||||| |||||||||||
Sbjct 2591625 ATTTCTGGTACATTCAACTTCATAATTGTATTCAAGACAGAACACA---TCCTTATGCAC 2591681
Query 155506 CCCTTCCACATGCTTGGAGTAGCAGGTGTGTTCGGT 155541
|| ||||||||| | || ||||| ||||| ||| ||
Sbjct 2591682 CCATTCCACATGTTAGGCGTAGCTGGTGTATTCTGT 2591717
>seq8
Length=7641483
Score = 96.9 bits (106), Expect = 4e-15
Identities = 124/170 (73%), Gaps = 6/170 (4%)
Strand=Plus/Plus
Query 155794 ACGATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTAGACGCT---AGT 155850
|| ||||| |||||||| |||| |||| | || ||||| || |||| ||| | |||
Sbjct 525094 ACTATGGCTTTCAACCTAAACGATTTCCATTTTAACCAATCCATAGTTGACAATCCGAGT 525153
Query 155851 GGTAAAGTCATCCCTACATGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTA 155910
|| || || || ||| | || || | |||| ||| |||||||||||||||
Sbjct 525154 CGT---GTTATTAATATTTGGACTGATATCATCAACCATGCTAATCTTGGTATGGAAGTG 525210
Query 155911 ATGCACGAGCGTAACGCTCACAACTTCCCTCTTGACCTTGCTGCTGCTGA 155960
||||| || ||||| ||| ||||||||||||| ||| | ||||| | |||
Sbjct 525211 ATGCATGAACGTAATGCTTACAACTTCCCTCTAGACTTAGCTGCAGTTGA 525260
>seq3
Length=8976907
Score = 89.7 bits (98), Expect = 6e-13
Identities = 150/214 (70%), Gaps = 11/214 (5%)
Strand=Plus/Plus
Query 155212 GAAGCAGCAACTCTTGATGAGTGGTTGTACAATGGTGGTCCTTTCCAACT---TGTAGTC 155268
||||| ||| | ||||| ||||||| |||||||| ||||||| | | || ||| |
Sbjct 715733 GAAGCCGCATATGTTGATTAGTGGTTATACAATGGCGGTCCTTACGAGCTAATTGTTCTA 715792
Query 155269 TTC--CACTTCCTTATCGGAATCACAGCATACTG--TGG-TCGTCAGTGGGAACTTTCTT 155323
||| |||||| | | || | ||| | || ||| |||| ||||||||||| ||
Sbjct 715793 TTCTACACTTCTTAMTTGGTGT---AGCTTGCTACATGGATCGTGAGTGGGAACTTAGTT 715849
Query 155324 ACCGTCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCGT 155383
|||||| || |||| ||||||||| ||||||||| || || || || | |||||
Sbjct 715850 TCCGTCTGGGTATGCATCCTTGGATTGCTGTTGCATATTCAGCTCCTGTWGCAGCTGCTA 715909
Query 155384 TCGCTGTATTCCTTGTTTATCCTTTCGGTCAAGG 155417
||||| || | | || | | | ||||||||
Sbjct 715910 CTGCTGTTTTATTGATCTACCTTATTGGTCAAGG 715943
>seq7
Length=7914316
Score = 84.2 bits (92), Expect = 3e-11
Identities = 77/97 (79%), Gaps = 1/97 (1%)
Strand=Plus/Minus
Query 155182 GCAATTGGTCTCCACTTCT-ATCCTATTTGGGAAGCAGCAACTCTTGATGAGTGGTTGTA 155240
|| |||||| | || || | |||| || ||||||||||||||| |||||||||||| ||
Sbjct 495565 GCTATTGGTTTGCATTTTTTATCCAATCTGGGAAGCAGCAACTGTTGATGAGTGGTAATA 495506
Query 155241 CAATGGTGGTCCTTTCCAACTTGTAGTCTTCCACTTC 155277
|||||||||||||| | || | | || | ||||||
Sbjct 495505 CAATGGTGGTCCTTACGAAYTAATCGTTCTACACTTC 495469
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 584835053791200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |