Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq2 118 1e-21 seq6 100 3e-16 seq8 96.9 4e-15 seq3 89.7 6e-13 seq7 84.2 3e-11 >seq2 Length=11374105 Score = 118 bits (130), Expect = 1e-21 Identities = 124/163 (76%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 155302 GGTCGTCAGTGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGATCTGTGTTGCATAC 155361 |||||| |||||||||| || |||| | || |||||||||||||| ||||||||| Sbjct 4329613 GGTCGTGAGTGGGAACTAAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGTTGCATAT 4329672 Query 155362 TCTGCACCAGTATCTGCTGCGTTCGCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCT 155421 || || || ||| | ||||| ||||| ||| | | || ||| | |||||||| | Sbjct 4329673 TCAGCTCCTGTAGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGT 4329732 Query 155422 TTCTCTGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACT 155464 || ||||||| |||||||| || || ||||||||||| |||| Sbjct 4329733 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACT 4329775 >seq6 Length=8045491 Score = 100 bits (110), Expect = 3e-16 Identities = 116/156 (74%), Gaps = 3/156 (2%) Strand=Plus/Plus Query 155386 GCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGT 155445 ||||| ||| | | || ||| | |||||||| ||| ||||||| || |||| || Sbjct 2591565 GCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTTTCTGATGGTTTGTCTCTAGGA 2591624 Query 155446 ATCTCTGGTACTTTTAACTATATGTTCGTGTTCCAAGCAGAACACAATATCCTTATGCAC 155505 || |||||||| || |||| || | || ||| | ||||||||| ||||||||||| Sbjct 2591625 ATTTCTGGTACATTCAACTTCATAATTGTATTCAAGACAGAACACA---TCCTTATGCAC 2591681 Query 155506 CCCTTCCACATGCTTGGAGTAGCAGGTGTGTTCGGT 155541 || ||||||||| | || ||||| ||||| ||| || Sbjct 2591682 CCATTCCACATGTTAGGCGTAGCTGGTGTATTCTGT 2591717 >seq8 Length=7641483 Score = 96.9 bits (106), Expect = 4e-15 Identities = 124/170 (73%), Gaps = 6/170 (4%) Strand=Plus/Plus Query 155794 ACGATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTAGACGCT---AGT 155850 || ||||| |||||||| |||| |||| | || ||||| || |||| ||| | ||| Sbjct 525094 ACTATGGCTTTCAACCTAAACGATTTCCATTTTAACCAATCCATAGTTGACAATCCGAGT 525153 Query 155851 GGTAAAGTCATCCCTACATGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTA 155910 || || || || ||| | || || | |||| ||| ||||||||||||||| Sbjct 525154 CGT---GTTATTAATATTTGGACTGATATCATCAACCATGCTAATCTTGGTATGGAAGTG 525210 Query 155911 ATGCACGAGCGTAACGCTCACAACTTCCCTCTTGACCTTGCTGCTGCTGA 155960 ||||| || ||||| ||| ||||||||||||| ||| | ||||| | ||| Sbjct 525211 ATGCATGAACGTAATGCTTACAACTTCCCTCTAGACTTAGCTGCAGTTGA 525260 >seq3 Length=8976907 Score = 89.7 bits (98), Expect = 6e-13 Identities = 150/214 (70%), Gaps = 11/214 (5%) Strand=Plus/Plus Query 155212 GAAGCAGCAACTCTTGATGAGTGGTTGTACAATGGTGGTCCTTTCCAACT---TGTAGTC 155268 ||||| ||| | ||||| ||||||| |||||||| ||||||| | | || ||| | Sbjct 715733 GAAGCCGCATATGTTGATTAGTGGTTATACAATGGCGGTCCTTACGAGCTAATTGTTCTA 715792 Query 155269 TTC--CACTTCCTTATCGGAATCACAGCATACTG--TGG-TCGTCAGTGGGAACTTTCTT 155323 ||| |||||| | | || | ||| | || ||| |||| ||||||||||| || Sbjct 715793 TTCTACACTTCTTAMTTGGTGT---AGCTTGCTACATGGATCGTGAGTGGGAACTTAGTT 715849 Query 155324 ACCGTCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCGT 155383 |||||| || |||| ||||||||| ||||||||| || || || || | ||||| Sbjct 715850 TCCGTCTGGGTATGCATCCTTGGATTGCTGTTGCATATTCAGCTCCTGTWGCAGCTGCTA 715909 Query 155384 TCGCTGTATTCCTTGTTTATCCTTTCGGTCAAGG 155417 ||||| || | | || | | | |||||||| Sbjct 715910 CTGCTGTTTTATTGATCTACCTTATTGGTCAAGG 715943 >seq7 Length=7914316 Score = 84.2 bits (92), Expect = 3e-11 Identities = 77/97 (79%), Gaps = 1/97 (1%) Strand=Plus/Minus Query 155182 GCAATTGGTCTCCACTTCT-ATCCTATTTGGGAAGCAGCAACTCTTGATGAGTGGTTGTA 155240 || |||||| | || || | |||| || ||||||||||||||| |||||||||||| || Sbjct 495565 GCTATTGGTTTGCATTTTTTATCCAATCTGGGAAGCAGCAACTGTTGATGAGTGGTAATA 495506 Query 155241 CAATGGTGGTCCTTTCCAACTTGTAGTCTTCCACTTC 155277 |||||||||||||| | || | | || | |||||| Sbjct 495505 CAATGGTGGTCCTTACGAAYTAATCGTTCTACACTTC 495469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584835053791200