Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq6 102 2e-17 seq8 96.9 1e-15 seq19 80.6 8e-11 seq2 80.6 8e-11 >seq6 Length=8045491 Score = 102 bits (112), Expect = 2e-17 Identities = 114/152 (75%), Gaps = 3/152 (2%) Strand=Plus/Minus Query 40947 AAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGG 41006 || || || || ||||| | ||| |||||||||||||| || |||| |||||| | | Sbjct 2591713 AATACACCAGCTACGCCTAACATGTGGAATGGGTGCATAAGGATGT---GTTCTGTCTTG 2591657 Query 41007 AAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAAGAA 41066 || |||| |||||||||||||| ||| ||||||| || || ||||||||| ||| Sbjct 2591656 AATACAATTATGAAGTTGAATGTACCAGAAATTCCTAGAGACAAACCATCAGAAAAACTT 2591597 Query 41067 CCCTGACCGAATGGATAAACTAAGAATACAGC 41098 || ||||| | || || | ||||| ||||| Sbjct 2591596 CCTTGACCAATAGGGTAGATCAAGAAAACAGC 2591565 >seq8 Length=7641483 Score = 96.9 bits (106), Expect = 1e-15 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 40524 TCAGCAGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATA 40583 ||| | | ||||||||||||||| ||||||| ||| ||||| || ||||| ||||||||| Sbjct 525260 TCAACTGCAGCTAAGTCTAGAGGGAAGTTGTAAGCATTACGTTCATGCATCACTTCCATA 525201 Query 40584 CCTAGACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCT 40643 || ||| | ||| | | ||||| |||| || ||| || || | ||| Sbjct 525200 CCAAGATTAGCATGGTTGATGATATCAGTCCAAATATTAATAACACGACTCGGATTGTCA 525141 Query 40644 ACTACTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACC 40699 |||| || |||||||| | ||| | || ||||| |||||||||||| ||||| Sbjct 525140 ACTATGGATTGGTTAAAATGGAAATCGTTTAGGTTGAAAGCCATAGTACTAATACC 525085 >seq19 Length=3929835 Score = 80.6 bits (88), Expect = 8e-11 Identities = 70/87 (80%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 40532 AGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAGACT 40591 |||||||||||||| ||||||||||| ||||| || ||||| ||||||||||| || | Sbjct 3082549 AGCTAAGTCTAGAGAGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGGTT 3082490 Query 40592 CTGTCTGTTAAGAACATCAGCCCAAGT 40618 | ||| | || |||||||||||| Sbjct 3082489 AGCACGGTTGATAATATCAGCCCAAGT 3082463 >seq2 Length=11374105 Score = 80.6 bits (88), Expect = 8e-11 Identities = 116/159 (73%), Gaps = 6/159 (4%) Strand=Plus/Minus Query 41020 AGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAAGAACCCTGACCGAATG 41079 ||||||| || ||| ||||||| ||||||||||||||| ||| || ||||| | | Sbjct 4329775 AGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCAATAG 4329716 Query 41080 GATAAACTAAGAATACAGC--TAG-AGCTGCTGACAATGGAGCTGTGTATGCCACAAATA 41136 | || | ||||| ||||| ||| ||||||| ||| ||||||| ||||| ||| | Sbjct 4329715 GGTAGATCAAGAAAACAGCAGTAGCAGCTGCT-ACA--GGAGCTGAATATGCAACAGCAA 4329659 Query 41137 TCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACT 41175 |||| || | |||||| | | | | |||||||||| Sbjct 4329658 TCCAAGGACGCATACCCAAACGGAAACTTAGTTCCCACT 4329620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143702365870680