Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq2 127 2e-24 seq6 118 1e-21 seq8 100 3e-16 seq3 87.8 2e-12 seq11 84.2 2e-11 >seq2 Length=11374105 Score = 127 bits (140), Expect = 2e-24 Identities = 126/163 (77%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 67849 AGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGAACCTTGACCGAAAG 67908 |||| |||||||||||||| || |||||||| | ||||| ||| |||||||| | || Sbjct 4329775 AGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCAATAG 4329716 Query 67909 GATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTATGCTACACAGATCC 67968 | |||| |||||| ||||| || || | || ||||| || ||||| ||| |||| Sbjct 4329715 GGTAGATCAAGAAAACAGCAGTAGCAGCTGCTACAGGAGCTGAATATGCAACAGCAATCC 4329656 Query 67969 AAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACC 68011 ||||||||||||| | |||| || |||||||||| |||||| Sbjct 4329655 AAGGACGCATACCCAAACGGAAACTTAGTTCCCACTCACGACC 4329613 >seq6 Length=8045491 Score = 118 bits (130), Expect = 1e-21 Identities = 120/156 (77%), Gaps = 3/156 (2%) Strand=Plus/Minus Query 67772 ACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGC 67831 || ||||||||| ||||| || | ||| |||||||||||||||||||||| | |||| Sbjct 2591717 ACAGAATACACCAGCTACGCCTAACATGTGGAATGGGTGCATAAGGATGT---GTTCTGT 2591661 Query 67832 TTGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAA 67891 | ||| || | ||| |||| || ||||||||||| || |||| || | ||||| || Sbjct 2591660 CTTGAATACAATTATGAAGTTGAATGTACCAGAAATTCCTAGAGACAAACCATCAGAAAA 2591601 Query 67892 AGAACCTTGACCGAAAGGATAGACCAAGAACACAGC 67927 | |||||||| | ||| |||| |||||| ||||| Sbjct 2591600 ACTTCCTTGACCAATAGGGTAGATCAAGAAAACAGC 2591565 >seq8 Length=7641483 Score = 100 bits (110), Expect = 3e-16 Identities = 125/170 (74%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 67353 TCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATT 67412 ||| | ||||| | ||| ||||||||||||| ||| ||||| || ||||| |||||||| Sbjct 525260 TCAACTGCAGCTAAGTCTAGAGGGAAGTTGTAAGCATTACGTTCATGCATCACTTCCATA 525201 Query 67413 CCAAGTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTG---CG 67469 ||||| || ||| | ||| || | |||| || ||| || || || | | Sbjct 525200 CCAAGATTAGCATGGTTGATGATATCAGTCCAAATATTAATAAC---ACGACTCGGATTG 525144 Query 67470 TCAACGACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGT 67519 ||||| | ||||||||| || | |||| |||| |||||||| |||||||| Sbjct 525143 TCAACTATGGATTGGTTAAAATGGAAATCGTTTAGGTTGAAAGCCATAGT 525094 >seq3 Length=8976907 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/214 (70%), Gaps = 11/214 (5%) Strand=Plus/Minus Query 67896 CCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTAT 67955 |||||||| | | | |||| ||| || ||||| || || | || ||||| || ||| Sbjct 715943 CCTTGACCAATAAGGTAGATCAATAAAACAGCAGTAGCAGCTGCWACAGGAGCTGAATAT 715884 Query 67956 GCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGA-CCA-- 68012 || ||| ||||||||| ||||||| |||||| || ||||||||||| |||| ||| Sbjct 715883 GCAACAGCAATCCAAGGATGCATACCCAGACGGAAACTAAGTTCCCACTCACGATCCATG 715824 Query 68013 CAGTATGCTGTGATTCCGATAAGGAAGTG--GAAGACTACA---AGTTGGAAAGGTCCAC 68067 || | ||| | || | | |||||| ||| | ||| || | | |||| || | Sbjct 715823 TAGCAAGCT---ACACCAAKTAAGAAGTGTAGAATAGAACAATTAGCTCGTAAGGACCGC 715767 Query 68068 CATTATACAACCACTCATCTAGAGTTGCTGCTTC 68101 |||| || ||||||| ||| | | ||| ||||| Sbjct 715766 CATTGTATAACCACTAATCAACATATGCGGCTTC 715733 >seq11 Length=5849386 Score = 84.2 bits (92), Expect = 2e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 67853 AAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGAACCTTGACCGAAAGGATA 67912 ||||| ||||||||| || |||||||| | ||||| ||| |||||||| ||| || Sbjct 4649044 AAAAGCACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCAGTAGGGTA 4649103 Query 67913 GACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTATGCTACACAGATCCAAGG 67972 || |||||| | ||| ||| | || |||| || ||||| ||| |||||||| Sbjct 4649104 GATCAAGAAAAAAGCAGTTGCAACTACTACATGAGCTGAATATGCAACAGCAATCCAAGG 4649163 Query 67973 ACGCATACCAAGACGGTAA 67991 ||| ||||| |||||| || Sbjct 4649164 ACGAATACCCAGACGGAAA 4649182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566947058263200