Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17]
20 sequences; 136,670,443 total letters
Query= NC_021072.1
Length=178807
Score E
Sequences producing significant alignments: (Bits) Value
seq2 134 2e-26
seq8 102 9e-17
seq6 96.9 4e-15
seq7 86.0 7e-12
seq11 84.2 3e-11
>seq2
Length=11374105
Score = 134 bits (148), Expect = 2e-26
Identities = 135/174 (78%), Gaps = 1/174 (1%)
Strand=Plus/Minus
Query 68330 AGTTGAAAGTACCAGAAATGCCGAGAGGCATTGCGTCAGAGAACGAACCTTGACCGAAAG 68389
||||||||||||||||||| || |||||||| | ||||| || |||||||| | ||
Sbjct 4329775 AGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCAATAG 4329716
Query 68390 GATAGACCAGGAAGACTGCGGATGCTGCTGCAACAGGTGCAGAGTATGCAACACAGATCC 68449
| |||| || ||| || || | || ||||| ||||| || || ||||||||| ||||
Sbjct 4329715 GGTAGATCAAGAAAACAGCAGTAGCAGCTGCTACAGGAGCTGAATATGCAACAGCAATCC 4329656
Query 68450 AAGGACGCATACCAAGACGATAGGAAAGTTCCCATTCACGTCCCATGTATGCAA 68503
||||||||||||| | ||| | |||||||| ||||| |||||||| ||||
Sbjct 4329655 AAGGACGCATACCCAAACGGAAACTTAGTTCCCACTCACGACCCATGTA-GCAA 4329603
>seq8
Length=7641483
Score = 102 bits (112), Expect = 9e-17
Identities = 140/196 (71%), Gaps = 0/196 (0%)
Strand=Plus/Minus
Query 67834 TCAGCAGCAGCAAGGTCGAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATA 67893
||| | ||||| | ||| ||||||||||||| || ||||| |||||||| |||||||||
Sbjct 525260 TCAACTGCAGCTAAGTCTAGAGGGAAGTTGTAAGCATTACGTTCATGCATCACTTCCATA 525201
Query 67894 CCCAAACCAGCGCGGTTGAGAACGTCTGCCCAGGTAGGCAGAACCTTACCAGAACTATCA 67953
|| | | ||| |||||| | || | ||| || | ||| || | | | |||
Sbjct 525200 CCAAGATTAGCATGGTTGATGATATCAGTCCAAATATTAATAACACGACTCGGATTGTCA 525141
Query 67954 AGGATAGACTGGTTGAAGTTGAAACCATTCAGGTTGAATGCCATGGTGCTAACACCAAGT 68013
| || || ||||| || | |||| | || |||||||| ||||| || |||| ||| |
Sbjct 525140 ACTATGGATTGGTTAAAATGGAAATCGTTTAGGTTGAAAGCCATAGTACTAATACCTAAA 525081
Query 68014 GCAGTGAACCAGATAC 68029
||| | ||||| ||||
Sbjct 525080 GCAATAAACCAAATAC 525065
>seq6
Length=8045491
Score = 96.9 bits (106), Expect = 4e-15
Identities = 113/152 (74%), Gaps = 3/152 (2%)
Strand=Plus/Minus
Query 68257 AATACGCCAGCAACGCCGAGCATATGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGG 68316
||||| ||||| ||||| | ||| ||||| |||||||| ||||||| | |||| | |
Sbjct 2591713 AATACACCAGCTACGCCTAACATGTGGAATGGGTGCATAAGGATGT---GTTCTGTCTTG 2591657
Query 68317 AACACCAGCATGTAGTTGAAAGTACCAGAAATGCCGAGAGGCATTGCGTCAGAGAACGAA 68376
|| || | ||| ||||||| ||||||||||| || |||| || | ||||| ||
Sbjct 2591656 AATACAATTATGAAGTTGAATGTACCAGAAATTCCTAGAGACAAACCATCAGAAAAACTT 2591597
Query 68377 CCTTGACCGAAAGGATAGACCAGGAAGACTGC 68408
|||||||| | ||| |||| || ||| || ||
Sbjct 2591596 CCTTGACCAATAGGGTAGATCAAGAAAACAGC 2591565
>seq7
Length=7914316
Score = 86.0 bits (94), Expect = 7e-12
Identities = 94/123 (76%), Gaps = 7/123 (6%)
Strand=Plus/Plus
Query 68508 ACCAATCAGGAAGTG---AAAGATTACGAGTTGGAAAGGACCACCATTGTACAACCACTC 68564
||||| | |||||| || ||||| || | |||||||||||||||| |||||||
Sbjct 495460 ACCAAGTAAGAAGTGTAGAACGATTA---RTTCGTAAGGACCACCATTGTATTACCACTC 495516
Query 68565 ATCAAGGGTTGCTGCTTCCCAAATGGGAT-AAAAGTGAAGACCAATTGCATTTGAACTAG 68623
||||| |||||||||||||| || |||| |||| || | |||||| || ||| |||
Sbjct 495517 ATCAACAGTTGCTGCTTCCCAGATTGGATAAAAAATGCAAACCAATAGCTGCAGAAGTAG 495576
Query 68624 GAA 68626
|||
Sbjct 495577 GAA 495579
>seq11
Length=5849386
Score = 84.2 bits (92), Expect = 3e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 68335 AAAGTACCAGAAATGCCGAGAGGCATTGCGTCAGAGAACGAACCTTGACCGAAAGGATAG 68394
|||| ||||||||| || |||||||| | ||||| || |||||||| ||| |||
Sbjct 4649045 AAAGCACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCAGTAGGGTAG 4649104
Query 68395 ACCAGGAAGACTGCGGATGCTGCTGCAACAGGTGCAGAGTATGCAACACAGATCCAAGGA 68454
| || ||| | || | ||| || | ||| | || || ||||||||| |||||||||
Sbjct 4649105 ATCAAGAAAAAAGCAGTTGCAACTACTACATGAGCTGAATATGCAACAGCAATCCAAGGA 4649164
Query 68455 CGCATACCAAGACG 68468
|| ||||| |||||
Sbjct 4649165 CGAATACCCAGACG 4649178
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 572054256986400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |