Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq2 134 2e-26 seq8 102 9e-17 seq6 96.9 4e-15 seq7 86.0 7e-12 seq11 84.2 3e-11 >seq2 Length=11374105 Score = 134 bits (148), Expect = 2e-26 Identities = 135/174 (78%), Gaps = 1/174 (1%) Strand=Plus/Minus Query 68330 AGTTGAAAGTACCAGAAATGCCGAGAGGCATTGCGTCAGAGAACGAACCTTGACCGAAAG 68389 ||||||||||||||||||| || |||||||| | ||||| || |||||||| | || Sbjct 4329775 AGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCAATAG 4329716 Query 68390 GATAGACCAGGAAGACTGCGGATGCTGCTGCAACAGGTGCAGAGTATGCAACACAGATCC 68449 | |||| || ||| || || | || ||||| ||||| || || ||||||||| |||| Sbjct 4329715 GGTAGATCAAGAAAACAGCAGTAGCAGCTGCTACAGGAGCTGAATATGCAACAGCAATCC 4329656 Query 68450 AAGGACGCATACCAAGACGATAGGAAAGTTCCCATTCACGTCCCATGTATGCAA 68503 ||||||||||||| | ||| | |||||||| ||||| |||||||| |||| Sbjct 4329655 AAGGACGCATACCCAAACGGAAACTTAGTTCCCACTCACGACCCATGTA-GCAA 4329603 >seq8 Length=7641483 Score = 102 bits (112), Expect = 9e-17 Identities = 140/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 67834 TCAGCAGCAGCAAGGTCGAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATA 67893 ||| | ||||| | ||| ||||||||||||| || ||||| |||||||| ||||||||| Sbjct 525260 TCAACTGCAGCTAAGTCTAGAGGGAAGTTGTAAGCATTACGTTCATGCATCACTTCCATA 525201 Query 67894 CCCAAACCAGCGCGGTTGAGAACGTCTGCCCAGGTAGGCAGAACCTTACCAGAACTATCA 67953 || | | ||| |||||| | || | ||| || | ||| || | | | ||| Sbjct 525200 CCAAGATTAGCATGGTTGATGATATCAGTCCAAATATTAATAACACGACTCGGATTGTCA 525141 Query 67954 AGGATAGACTGGTTGAAGTTGAAACCATTCAGGTTGAATGCCATGGTGCTAACACCAAGT 68013 | || || ||||| || | |||| | || |||||||| ||||| || |||| ||| | Sbjct 525140 ACTATGGATTGGTTAAAATGGAAATCGTTTAGGTTGAAAGCCATAGTACTAATACCTAAA 525081 Query 68014 GCAGTGAACCAGATAC 68029 ||| | ||||| |||| Sbjct 525080 GCAATAAACCAAATAC 525065 >seq6 Length=8045491 Score = 96.9 bits (106), Expect = 4e-15 Identities = 113/152 (74%), Gaps = 3/152 (2%) Strand=Plus/Minus Query 68257 AATACGCCAGCAACGCCGAGCATATGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGG 68316 ||||| ||||| ||||| | ||| ||||| |||||||| ||||||| | |||| | | Sbjct 2591713 AATACACCAGCTACGCCTAACATGTGGAATGGGTGCATAAGGATGT---GTTCTGTCTTG 2591657 Query 68317 AACACCAGCATGTAGTTGAAAGTACCAGAAATGCCGAGAGGCATTGCGTCAGAGAACGAA 68376 || || | ||| ||||||| ||||||||||| || |||| || | ||||| || Sbjct 2591656 AATACAATTATGAAGTTGAATGTACCAGAAATTCCTAGAGACAAACCATCAGAAAAACTT 2591597 Query 68377 CCTTGACCGAAAGGATAGACCAGGAAGACTGC 68408 |||||||| | ||| |||| || ||| || || Sbjct 2591596 CCTTGACCAATAGGGTAGATCAAGAAAACAGC 2591565 >seq7 Length=7914316 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/123 (76%), Gaps = 7/123 (6%) Strand=Plus/Plus Query 68508 ACCAATCAGGAAGTG---AAAGATTACGAGTTGGAAAGGACCACCATTGTACAACCACTC 68564 ||||| | |||||| || ||||| || | |||||||||||||||| ||||||| Sbjct 495460 ACCAAGTAAGAAGTGTAGAACGATTA---RTTCGTAAGGACCACCATTGTATTACCACTC 495516 Query 68565 ATCAAGGGTTGCTGCTTCCCAAATGGGAT-AAAAGTGAAGACCAATTGCATTTGAACTAG 68623 ||||| |||||||||||||| || |||| |||| || | |||||| || ||| ||| Sbjct 495517 ATCAACAGTTGCTGCTTCCCAGATTGGATAAAAAATGCAAACCAATAGCTGCAGAAGTAG 495576 Query 68624 GAA 68626 ||| Sbjct 495577 GAA 495579 >seq11 Length=5849386 Score = 84.2 bits (92), Expect = 3e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 68335 AAAGTACCAGAAATGCCGAGAGGCATTGCGTCAGAGAACGAACCTTGACCGAAAGGATAG 68394 |||| ||||||||| || |||||||| | ||||| || |||||||| ||| ||| Sbjct 4649045 AAAGCACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCAGTAGGGTAG 4649104 Query 68395 ACCAGGAAGACTGCGGATGCTGCTGCAACAGGTGCAGAGTATGCAACACAGATCCAAGGA 68454 | || ||| | || | ||| || | ||| | || || ||||||||| ||||||||| Sbjct 4649105 ATCAAGAAAAAAGCAGTTGCAACTACTACATGAGCTGAATATGCAACAGCAATCCAAGGA 4649164 Query 68455 CGCATACCAAGACG 68468 || ||||| ||||| Sbjct 4649165 CGAATACCCAGACG 4649178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572054256986400