Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq19 96.9 1e-14 seq12 91.5 4e-13 >seq19 Length=3929835 Score = 96.9 bits (106), Expect = 1e-14 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 156063 CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCA 156122 ||||| ||||| |||||||||||||| | ||||||||| | | ||| |||| ||| ||| Sbjct 2578422 CCACCTTGATCAACATACCGAGCAGTGTCATTGAAGACCCGCAACATTGGAACAATGCCA 2578363 Query 156123 TTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATGT 156182 || || || || || ||||| || |||| |||| || |||| |||||||| | Sbjct 2578362 TTAGATGTACCGTTCGTTCCACGGATATAACTGCCAGTTGCTCGAATATTATGAACAGAA 2578303 Query 156183 AGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATA 156242 | || || || || | |||| || ||||||||||| | || | |||| Sbjct 2578302 ACACCGATTCCTCCAGCAGATTTGCTTATAACCGCGCATTCCTTCAATGTGTCATAAATT 2578243 Query 156243 CCTTCAATAGAATCATCTTCCAT 156265 |||||||| |||||||| ||| Sbjct 2578242 CCTTCAATGCTATCATCTTTCAT 2578220 >seq12 Length=5901629 Score = 91.5 bits (100), Expect = 4e-13 Identities = 175/258 (68%), Gaps = 0/258 (0%) Strand=Plus/Plus Query 251403 GGCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAG 251462 |||||| || ||||| || | ||||||||||| ||||| || || |||| | || Sbjct 523544 GGCGATGAGCCCACATTTCTCGCACACATGGACTCTGTAGGCGTCGCTCTGGTCAAACAG 523603 Query 251463 CCGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACC 251522 || ||||| ||| ||| || || || | ||||| || || ||||||||||| || Sbjct 523604 CCTCTCCTTGAGGAAATGAGCAGCGCCATGGGCGATCATGCAGTCGCGCTCCATTTCTCC 523663 Query 251523 GAAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCAT 251582 || || || || ||||| | || || || || |||||||| | ||||| | | Sbjct 523664 AAAGCGCAGGCCCCCATCTCTAGACCGCCCTTCTGCAGGCTGCCTGGTGAGGATCTGGAC 523723 Query 251583 AGGACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAA 251642 ||| || | ||| ||| ||| || | ||||||||||| | | ||||||| | Sbjct 523724 AGGGCCACGGCCCCGGGAATGGATCTTGTCGTCAACCATATGCTTCAATCTCTGGTAGTA 523783 Query 251643 TGCGGGACCGATGAAGAT 251660 | ||| |||| ||| || Sbjct 523784 CGTGGGGCCGAGGAAAAT 523801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471817222846740