Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17]
20 sequences; 136,670,443 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq19 96.9 1e-14
seq12 91.5 4e-13
>seq19
Length=3929835
Score = 96.9 bits (106), Expect = 1e-14
Identities = 143/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 156063 CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCA 156122
||||| ||||| |||||||||||||| | ||||||||| | | ||| |||| ||| |||
Sbjct 2578422 CCACCTTGATCAACATACCGAGCAGTGTCATTGAAGACCCGCAACATTGGAACAATGCCA 2578363
Query 156123 TTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATGT 156182
|| || || || || ||||| || |||| |||| || |||| |||||||| |
Sbjct 2578362 TTAGATGTACCGTTCGTTCCACGGATATAACTGCCAGTTGCTCGAATATTATGAACAGAA 2578303
Query 156183 AGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATA 156242
| || || || || | |||| || ||||||||||| | || | ||||
Sbjct 2578302 ACACCGATTCCTCCAGCAGATTTGCTTATAACCGCGCATTCCTTCAATGTGTCATAAATT 2578243
Query 156243 CCTTCAATAGAATCATCTTCCAT 156265
|||||||| |||||||| |||
Sbjct 2578242 CCTTCAATGCTATCATCTTTCAT 2578220
>seq12
Length=5901629
Score = 91.5 bits (100), Expect = 4e-13
Identities = 175/258 (68%), Gaps = 0/258 (0%)
Strand=Plus/Plus
Query 251403 GGCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAG 251462
|||||| || ||||| || | ||||||||||| ||||| || || |||| | ||
Sbjct 523544 GGCGATGAGCCCACATTTCTCGCACACATGGACTCTGTAGGCGTCGCTCTGGTCAAACAG 523603
Query 251463 CCGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACC 251522
|| ||||| ||| ||| || || || | ||||| || || ||||||||||| ||
Sbjct 523604 CCTCTCCTTGAGGAAATGAGCAGCGCCATGGGCGATCATGCAGTCGCGCTCCATTTCTCC 523663
Query 251523 GAAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCAT 251582
|| || || || ||||| | || || || || |||||||| | ||||| | |
Sbjct 523664 AAAGCGCAGGCCCCCATCTCTAGACCGCCCTTCTGCAGGCTGCCTGGTGAGGATCTGGAC 523723
Query 251583 AGGACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAA 251642
||| || | ||| ||| ||| || | ||||||||||| | | ||||||| |
Sbjct 523724 AGGGCCACGGCCCCGGGAATGGATCTTGTCGTCAACCATATGCTTCAATCTCTGGTAGTA 523783
Query 251643 TGCGGGACCGATGAAGAT 251660
| ||| |||| ||| ||
Sbjct 523784 CGTGGGGCCGAGGAAAAT 523801
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471817222846740
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |