Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17]
20 sequences; 136,670,443 total letters
Query= NC_021530.1
Length=171407
Score E
Sequences producing significant alignments: (Bits) Value
seq2 138 1e-27
seq6 116 4e-21
seq8 113 5e-20
seq3 102 9e-17
seq19 82.4 8e-11
>seq2
Length=11374105
Score = 138 bits (152), Expect = 1e-27
Identities = 132/169 (78%), Gaps = 0/169 (0%)
Strand=Plus/Plus
Query 157907 TACATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTA 157966
|||||||| |||||||||||||| | |||||| |||||||| || ||||| |||
Sbjct 4329607 TACATGGGTCGTGAGTGGGAACTAAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGTT 4329666
Query 157967 GCATATTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAA 158026
|||||||| ||||| || || || || ||||||| ||| | |||| ||| | ||||||
Sbjct 4329667 GCATATTCAGCTCCTGTAGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCAA 4329726
Query 158027 GGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACT 158075
|| ||| || |||| ||||||||| || || ||||||||||| ||||
Sbjct 4329727 GGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACT 4329775
>seq6
Length=8045491
Score = 116 bits (128), Expect = 4e-21
Identities = 121/158 (77%), Gaps = 3/158 (2%)
Strand=Plus/Plus
Query 157995 CTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTG 158054
||||||| ||| | |||| ||| | |||||||| ||| || |||| | || |||| |
Sbjct 2591563 CTGCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTTTCTGATGGTTTGTCTCTAG 2591622
Query 158055 GTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGC 158114
| || |||||||| || |||| ||| |||||||| | ||||||||| |||||||||
Sbjct 2591623 GAATTTCTGGTACATTCAACTTCATAATTGTATTCAAGACAGAACACA---TCCTTATGC 2591679
Query 158115 ACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGT 158152
|||| ||||| ||| | || || ||||| |||||| ||
Sbjct 2591680 ACCCATTCCACATGTTAGGCGTAGCTGGTGTATTCTGT 2591717
>seq8
Length=7641483
Score = 113 bits (124), Expect = 5e-20
Identities = 125/167 (75%), Gaps = 0/167 (0%)
Strand=Plus/Plus
Query 158405 ACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGT 158464
|| ||||| |||||||| |||| |||| | || ||||| ||||| |||| || | ||
Sbjct 525094 ACTATGGCTTTCAACCTAAACGATTTCCATTTTAACCAATCCATAGTTGACAATCCGAGT 525153
Query 158465 CGTGTGTTGAACACCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATG 158524
||||| | || | ||| | ||| | | |||| ||| ||||||||||||||| |||
Sbjct 525154 CGTGTTATTAATATTTGGACTGATATCATCAACCATGCTAATCTTGGTATGGAAGTGATG 525213
Query 158525 CATGAGCGTAACGCACACAACTTCCCACTCGACCTTGCTGCTGCTGA 158571
||||| ||||| || |||||||||| || ||| | ||||| | |||
Sbjct 525214 CATGAACGTAATGCTTACAACTTCCCTCTAGACTTAGCTGCAGTTGA 525260
>seq3
Length=8976907
Score = 102 bits (112), Expect = 9e-17
Identities = 153/213 (72%), Gaps = 9/213 (4%)
Strand=Plus/Plus
Query 157823 GAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT---A 157879
|||||||||| ||||| ||||| | || || || ||||||| | | || | || |
Sbjct 715733 GAAGCCGCATATGTTGATTAGTGGTTATACAATGGCGGTCCTTACGAGCTAATTGTTCTA 715792
Query 157880 TTT--CACTTCCTCATTGGTAT--CTATGCATACATGGGACGTGAGTGGGAACTTTCATA 157935
|| |||||| | ||||| | || ||| ||||||| ||||||||||||||| |
Sbjct 715793 TTCTACACTTCTTAMTTGGTGTAGCT-TGC-TACATGGATCGTGAGTGGGAACTTAGTTT 715850
Query 157936 CCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCATC 157995
|||| | ||||||| || ||||| ||| |||||||| ||||| || || || || |
Sbjct 715851 CCGTCTGGGTATGCATCCTTGGATTGCTGTTGCATATTCAGCTCCTGTWGCAGCTGCTAC 715910
Query 157996 TGCTGTATTCCTCGTCTATCCTTTCGGTCAAGG 158028
|||||| || | |||| | | | ||||||||
Sbjct 715911 TGCTGTTTTATTGATCTACCTTATTGGTCAAGG 715943
>seq19
Length=3929835
Score = 82.4 bits (90), Expect = 8e-11
Identities = 77/98 (79%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 158466 GTGTGTTGAACACCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGC 158525
|||| | ||||| ||||| ||| | | ||||| ||| |||||||||||||||||||
Sbjct 3082452 GTGTTATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGC 3082511
Query 158526 ATGAGCGTAACGCACACAACTTCCCACTCGACCTTGCT 158563
|||| ||||| || ||||||||| | || ||| | |||
Sbjct 3082512 ATGAACGTAATGCTCACAACTTCTCTCTAGACTTAGCT 3082549
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548374262906400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |