Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_021530.1 Length=171407 Score E Sequences producing significant alignments: (Bits) Value seq2 138 1e-27 seq6 116 4e-21 seq8 113 5e-20 seq3 102 9e-17 seq19 82.4 8e-11 >seq2 Length=11374105 Score = 138 bits (152), Expect = 1e-27 Identities = 132/169 (78%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 157907 TACATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTA 157966 |||||||| |||||||||||||| | |||||| |||||||| || ||||| ||| Sbjct 4329607 TACATGGGTCGTGAGTGGGAACTAAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGTT 4329666 Query 157967 GCATATTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAA 158026 |||||||| ||||| || || || || ||||||| ||| | |||| ||| | |||||| Sbjct 4329667 GCATATTCAGCTCCTGTAGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCAA 4329726 Query 158027 GGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACT 158075 || ||| || |||| ||||||||| || || ||||||||||| |||| Sbjct 4329727 GGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACT 4329775 >seq6 Length=8045491 Score = 116 bits (128), Expect = 4e-21 Identities = 121/158 (77%), Gaps = 3/158 (2%) Strand=Plus/Plus Query 157995 CTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTG 158054 ||||||| ||| | |||| ||| | |||||||| ||| || |||| | || |||| | Sbjct 2591563 CTGCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTTTCTGATGGTTTGTCTCTAG 2591622 Query 158055 GTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGC 158114 | || |||||||| || |||| ||| |||||||| | ||||||||| ||||||||| Sbjct 2591623 GAATTTCTGGTACATTCAACTTCATAATTGTATTCAAGACAGAACACA---TCCTTATGC 2591679 Query 158115 ACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGT 158152 |||| ||||| ||| | || || ||||| |||||| || Sbjct 2591680 ACCCATTCCACATGTTAGGCGTAGCTGGTGTATTCTGT 2591717 >seq8 Length=7641483 Score = 113 bits (124), Expect = 5e-20 Identities = 125/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 158405 ACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGT 158464 || ||||| |||||||| |||| |||| | || ||||| ||||| |||| || | || Sbjct 525094 ACTATGGCTTTCAACCTAAACGATTTCCATTTTAACCAATCCATAGTTGACAATCCGAGT 525153 Query 158465 CGTGTGTTGAACACCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATG 158524 ||||| | || | ||| | ||| | | |||| ||| ||||||||||||||| ||| Sbjct 525154 CGTGTTATTAATATTTGGACTGATATCATCAACCATGCTAATCTTGGTATGGAAGTGATG 525213 Query 158525 CATGAGCGTAACGCACACAACTTCCCACTCGACCTTGCTGCTGCTGA 158571 ||||| ||||| || |||||||||| || ||| | ||||| | ||| Sbjct 525214 CATGAACGTAATGCTTACAACTTCCCTCTAGACTTAGCTGCAGTTGA 525260 >seq3 Length=8976907 Score = 102 bits (112), Expect = 9e-17 Identities = 153/213 (72%), Gaps = 9/213 (4%) Strand=Plus/Plus Query 157823 GAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT---A 157879 |||||||||| ||||| ||||| | || || || ||||||| | | || | || | Sbjct 715733 GAAGCCGCATATGTTGATTAGTGGTTATACAATGGCGGTCCTTACGAGCTAATTGTTCTA 715792 Query 157880 TTT--CACTTCCTCATTGGTAT--CTATGCATACATGGGACGTGAGTGGGAACTTTCATA 157935 || |||||| | ||||| | || ||| ||||||| ||||||||||||||| | Sbjct 715793 TTCTACACTTCTTAMTTGGTGTAGCT-TGC-TACATGGATCGTGAGTGGGAACTTAGTTT 715850 Query 157936 CCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCATC 157995 |||| | ||||||| || ||||| ||| |||||||| ||||| || || || || | Sbjct 715851 CCGTCTGGGTATGCATCCTTGGATTGCTGTTGCATATTCAGCTCCTGTWGCAGCTGCTAC 715910 Query 157996 TGCTGTATTCCTCGTCTATCCTTTCGGTCAAGG 158028 |||||| || | |||| | | | |||||||| Sbjct 715911 TGCTGTTTTATTGATCTACCTTATTGGTCAAGG 715943 >seq19 Length=3929835 Score = 82.4 bits (90), Expect = 8e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 158466 GTGTGTTGAACACCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGC 158525 |||| | ||||| ||||| ||| | | ||||| ||| ||||||||||||||||||| Sbjct 3082452 GTGTTATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGC 3082511 Query 158526 ATGAGCGTAACGCACACAACTTCCCACTCGACCTTGCT 158563 |||| ||||| || ||||||||| | || ||| | ||| Sbjct 3082512 ATGAACGTAATGCTCACAACTTCTCTCTAGACTTAGCT 3082549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548374262906400