Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17]
20 sequences; 136,670,443 total letters
Query= NC_021536.1
Length=171797
Score E
Sequences producing significant alignments: (Bits) Value
seq2 147 2e-30
seq3 107 2e-18
seq8 102 9e-17
seq19 86.0 7e-12
>seq2
Length=11374105
Score = 147 bits (162), Expect = 2e-30
Identities = 136/170 (80%), Gaps = 2/170 (1%)
Strand=Plus/Plus
Query 151166 TACATGGGTCGTGAGTGGGAACTGTCTTACCGCTTGGGTATGCGTCCCTGGATCTGC-GT 151224
||||||||||||||||||||||| || ||| |||||||||||||| ||||| ||| ||
Sbjct 4329607 TACATGGGTCGTGAGTGGGAACTAAGTTTCCGTTTGGGTATGCGTCCTTGGAT-TGCTGT 4329665
Query 151225 TGCATACTCTGCTCCAGTTGCTGCTGCGAGTGCAGTGTTCCTCGTCTATCCTTTCGGTCA 151284
|||||| || ||||| || || ||||| | ||| || ||| | |||| ||| | |||||
Sbjct 4329666 TGCATATTCAGCTCCTGTAGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCA 4329725
Query 151285 AGGTTCTTTCTCTGATGCAATGCCCCTGGGTATTTCTGGCACATTCAACT 151334
||| ||| ||||||| ||||| || || |||||||| || |||||||
Sbjct 4329726 AGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACT 4329775
>seq3
Length=8976907
Score = 107 bits (118), Expect = 2e-18
Identities = 156/214 (73%), Gaps = 11/214 (5%)
Strand=Plus/Plus
Query 151082 GAAGCAGCCTCTCTCGATGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGTC--- 151138
||||| || | | | ||| | ||| | ||||| || ||||||| | | || ||||
Sbjct 715733 GAAGCCGCATATGTTGATTAGTGGTTATACAATGGCGGTCCTTACGAGCTAATTGTTCTA 715792
Query 151139 TTC--CACTTCCTGATTGGTAT--CTATGCTTACATGGGTCGTGAGTGGGAACTGTCTTA 151194
||| |||||| | ||||| | || |||| |||||| ||||||||||||||| ||
Sbjct 715793 TTCTACACTTCTTAMTTGGTGTAGCT-TGCT-ACATGGATCGTGAGTGGGAACTTAGTTT 715850
Query 151195 CCGCTTGGGTATGCGTCCCTGGATCTGC-GTTGCATACTCTGCTCCAGTTGCTGCTGCGA 151253
||| ||||||||| ||| ||||| ||| |||||||| || ||||| || || ||||| |
Sbjct 715851 CCGTCTGGGTATGCATCCTTGGAT-TGCTGTTGCATATTCAGCTCCTGTWGCAGCTGCTA 715909
Query 151254 GTGCAGTGTTCCTCGTCTATCCTTTCGGTCAAGG 151287
||| || || | |||| | | | ||||||||
Sbjct 715910 CTGCTGTTTTATTGATCTACCTTATTGGTCAAGG 715943
>seq8
Length=7641483
Score = 102 bits (112), Expect = 9e-17
Identities = 140/196 (71%), Gaps = 0/196 (0%)
Strand=Plus/Plus
Query 151635 GTATCTGGTTCACTGCACTTGGTGTCAGCACCATGGCATTCAACCTGAACGGTTTCAACT 151694
|||| ||||| | ||| | ||| | || || ||||| |||||||| |||| |||| | |
Sbjct 525065 GTATTTGGTTTATTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGATTTCCATT 525124
Query 151695 TCAACCAGTCCATCATGGATGGTCAGGGCAAAGTCCTGAACACCTGGGCAGACGTTCTGA 151754
| ||||| ||||| | || || | | || | || | ||| | || | | |
Sbjct 525125 TTAACCAATCCATAGTTGACAATCCGAGTCGTGTTATTAATATTTGGACTGATATCATCA 525184
Query 151755 ACCGTGCAGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCTCTCG 151814
||| ||| ||| ||||||||||| ||||| || ||||||||| ||||||||||||| |
Sbjct 525185 ACCATGCTAATCTTGGTATGGAAGTGATGCATGAACGTAATGCTTACAACTTCCCTCTAG 525244
Query 151815 ACCTTGCTGCTGCTGA 151830
|| | ||||| | |||
Sbjct 525245 ACTTAGCTGCAGTTGA 525260
>seq19
Length=3929835
Score = 86.0 bits (94), Expect = 7e-12
Identities = 73/90 (81%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 151733 AACACCTGGGCAGACGTTCTGAACCGTGCAGGTCTGGGTATGGAAGTTATGCACGAGCGT 151792
||||| ||||| || || | |||||||| || ||||||||||||||||| || |||
Sbjct 3082460 AACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGT 3082519
Query 151793 AATGCTCACAACTTCCCTCTCGACCTTGCT 151822
||||||||||||||| |||| ||| | |||
Sbjct 3082520 AATGCTCACAACTTCTCTCTAGACTTAGCT 3082549
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 549622262594400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |