Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq2 147 2e-30 seq3 107 2e-18 seq8 102 9e-17 seq19 86.0 7e-12 >seq2 Length=11374105 Score = 147 bits (162), Expect = 2e-30 Identities = 136/170 (80%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 151166 TACATGGGTCGTGAGTGGGAACTGTCTTACCGCTTGGGTATGCGTCCCTGGATCTGC-GT 151224 ||||||||||||||||||||||| || ||| |||||||||||||| ||||| ||| || Sbjct 4329607 TACATGGGTCGTGAGTGGGAACTAAGTTTCCGTTTGGGTATGCGTCCTTGGAT-TGCTGT 4329665 Query 151225 TGCATACTCTGCTCCAGTTGCTGCTGCGAGTGCAGTGTTCCTCGTCTATCCTTTCGGTCA 151284 |||||| || ||||| || || ||||| | ||| || ||| | |||| ||| | ||||| Sbjct 4329666 TGCATATTCAGCTCCTGTAGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCA 4329725 Query 151285 AGGTTCTTTCTCTGATGCAATGCCCCTGGGTATTTCTGGCACATTCAACT 151334 ||| ||| ||||||| ||||| || || |||||||| || ||||||| Sbjct 4329726 AGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACT 4329775 >seq3 Length=8976907 Score = 107 bits (118), Expect = 2e-18 Identities = 156/214 (73%), Gaps = 11/214 (5%) Strand=Plus/Plus Query 151082 GAAGCAGCCTCTCTCGATGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGTC--- 151138 ||||| || | | | ||| | ||| | ||||| || ||||||| | | || |||| Sbjct 715733 GAAGCCGCATATGTTGATTAGTGGTTATACAATGGCGGTCCTTACGAGCTAATTGTTCTA 715792 Query 151139 TTC--CACTTCCTGATTGGTAT--CTATGCTTACATGGGTCGTGAGTGGGAACTGTCTTA 151194 ||| |||||| | ||||| | || |||| |||||| ||||||||||||||| || Sbjct 715793 TTCTACACTTCTTAMTTGGTGTAGCT-TGCT-ACATGGATCGTGAGTGGGAACTTAGTTT 715850 Query 151195 CCGCTTGGGTATGCGTCCCTGGATCTGC-GTTGCATACTCTGCTCCAGTTGCTGCTGCGA 151253 ||| ||||||||| ||| ||||| ||| |||||||| || ||||| || || ||||| | Sbjct 715851 CCGTCTGGGTATGCATCCTTGGAT-TGCTGTTGCATATTCAGCTCCTGTWGCAGCTGCTA 715909 Query 151254 GTGCAGTGTTCCTCGTCTATCCTTTCGGTCAAGG 151287 ||| || || | |||| | | | |||||||| Sbjct 715910 CTGCTGTTTTATTGATCTACCTTATTGGTCAAGG 715943 >seq8 Length=7641483 Score = 102 bits (112), Expect = 9e-17 Identities = 140/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 151635 GTATCTGGTTCACTGCACTTGGTGTCAGCACCATGGCATTCAACCTGAACGGTTTCAACT 151694 |||| ||||| | ||| | ||| | || || ||||| |||||||| |||| |||| | | Sbjct 525065 GTATTTGGTTTATTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGATTTCCATT 525124 Query 151695 TCAACCAGTCCATCATGGATGGTCAGGGCAAAGTCCTGAACACCTGGGCAGACGTTCTGA 151754 | ||||| ||||| | || || | | || | || | ||| | || | | | Sbjct 525125 TTAACCAATCCATAGTTGACAATCCGAGTCGTGTTATTAATATTTGGACTGATATCATCA 525184 Query 151755 ACCGTGCAGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCTCTCG 151814 ||| ||| ||| ||||||||||| ||||| || ||||||||| ||||||||||||| | Sbjct 525185 ACCATGCTAATCTTGGTATGGAAGTGATGCATGAACGTAATGCTTACAACTTCCCTCTAG 525244 Query 151815 ACCTTGCTGCTGCTGA 151830 || | ||||| | ||| Sbjct 525245 ACTTAGCTGCAGTTGA 525260 >seq19 Length=3929835 Score = 86.0 bits (94), Expect = 7e-12 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 151733 AACACCTGGGCAGACGTTCTGAACCGTGCAGGTCTGGGTATGGAAGTTATGCACGAGCGT 151792 ||||| ||||| || || | |||||||| || ||||||||||||||||| || ||| Sbjct 3082460 AACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGT 3082519 Query 151793 AATGCTCACAACTTCCCTCTCGACCTTGCT 151822 ||||||||||||||| |||| ||| | ||| Sbjct 3082520 AATGCTCACAACTTCTCTCTAGACTTAGCT 3082549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 549622262594400