Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq2 95.1 1e-14 seq19 84.2 3e-11 seq6 84.2 3e-11 >seq2 Length=11374105 Score = 95.1 bits (104), Expect = 1e-14 Identities = 123/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 72561 CTACATGGGTAGACAGTGGGAACTATCATACAGACTAGGAATGAGACCTTGGATATGTGT 72620 |||||||||| | ||||||||||| | | | | || ||| | |||||||| ||| Sbjct 4329606 CTACATGGGTCGTGAGTGGGAACTAAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGT 4329665 Query 72621 AGCATACTCAGCACCTGTATCTGCAGCATTTGCAGTATTCCTTGTGTATCCATTCGGTCA 72680 ||||| ||||| |||||| | || || ||| || ||| | | || || | ||||| Sbjct 4329666 TGCATATTCAGCTCCTGTAGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCA 4329725 Query 72681 GGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACT 72730 || || |||||||||||||| ||||| || || ||||| ||||||| Sbjct 4329726 AGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACT 4329775 >seq19 Length=3929835 Score = 84.2 bits (92), Expect = 3e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 73132 ACATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAAT 73191 || |||| ||| || | ||| | || |||||||| |||||||||||||||||| | ||| Sbjct 3082463 ACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 3082522 Query 73192 GCACACAACTTCCCACTAGACCTAGC 73217 || ||||||||| | |||||| |||| Sbjct 3082523 GCTCACAACTTCTCTCTAGACTTAGC 3082548 >seq6 Length=8045491 Score = 84.2 bits (92), Expect = 3e-11 Identities = 91/120 (76%), Gaps = 3/120 (3%) Strand=Plus/Plus Query 72688 TTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAA 72747 || ||||||||| || | ||||| || || ||||| ||||||||||| | || ||| | Sbjct 2591601 TTTTCTGATGGTTTGTCTCTAGGAATTTCTGGTACATTCAACTTCATAATTGTATTCAAG 2591660 Query 72748 GCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGT 72807 |||||| |||| || |||||||| ||||| ||| ||| ||||| ||| | ||| || Sbjct 2591661 ACAGAAC---ACATCCTTATGCACCCATTCCACATGTTAGGCGTAGCTGGTGTATTCTGT 2591717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572873456781600