Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq7 273 3e-67 seq2 105 8e-17 seq5 102 1e-15 seq18 100 3e-15 seq8 86.0 8e-11 >seq7 Length=7914316 Score = 273 bits (302), Expect = 3e-67 Identities = 251/315 (80%), Gaps = 5/315 (2%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||||||||||||||||||||||||||||||||| ||||| | |||| || || ||| Sbjct 1959220 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCGCGGGCCTCGGCGACCTGG 1959279 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 |||||||||||||| ||||| |||||||||||| ||||||||||||| ||| ||||| Sbjct 1959280 ACCTCCTTCATGAAGCGGCCSGCCAGGTTCTCGAGCACGATGCCGTCGGAGGCCGCGAAG 1959339 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAG---CGACACCCAGTGG 869809 || || |||||||| |||| ||||||||||||||| || |||| | | ||||||| Sbjct 1959340 AAGGCGAGGACGTGGGTGATGAAGTGGCGCTCGTCGGCGGTGAGGTCCTGCTCCCAGTGC 1959399 Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869 | |||| | ||||||||||||||| || ||||||| || ||||| ||||| ||| Sbjct 1959400 CGGAGGTCGTGGGAGAGGTCCACCTCCTCCGCCGTCCAGAAGGACGCCTCCGCCTTCTTG 1959459 Query 869870 TACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTT-GTC 869928 ||||||||||| | ||| |||| | ||| ||||| | | || |||| |||||| | | Sbjct 1959460 TACATCTCCCAGATCTGCGGGTACCTGATCGGGAACATGCAGAACCGGTCGGGGTTCGCC 1959519 Query 869929 GCGCAACAGGGGTTC 869943 || || |||||| || Sbjct 1959520 GC-CAGCAGGGGCTC 1959533 Score = 185 bits (204), Expect = 1e-40 Identities = 205/273 (75%), Gaps = 8/273 (3%) Strand=Plus/Plus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || |||||||| ||| | |||||| |||| ||||||||||||||||||||||||| Sbjct 1958941 CCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGGCCGCGCTTC 1959000 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 |||||||| |||||||||||||| ||||| ||||| ||||||||||||||| ||| ||| Sbjct 1959001 TTGAGCCAGAAGATGGCGCAGAAGCTGCCGGAGAAGAAGATGCCCTCGACGCAGGCGAAG 1959060 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTC-GAGGCCCTCCTTGTTGATCCACTTCATCGCCCA 869358 ||| ||| |||||||| |||| || |||| || |||||| | ||||| Sbjct 1959061 GCGACGAGGCGCTCGGCGAAGGACTCGGAGG-------AGTCGATCCAGCGGAGGGCCCA 1959113 Query 869359 GTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTC 869418 ||||||||| ||| | || || ||||| | |||||| |||||| || |||| | Sbjct 1959114 GTCGGCCTTGCGGGCCACGCAGGGGACGGTGTCCACGGCGCGGAAGAGGCGGGCCTTGGC 1959173 Query 869419 GGCCGGGTCCTTGACATAGGTGTCGATCAGGAG 869451 | | |||||||| ||||| || | ||||| Sbjct 1959174 CTCGGAGTCCTTGATGTAGGTCTCCAGGAGGAG 1959206 Score = 183 bits (202), Expect = 4e-40 Identities = 235/324 (73%), Gaps = 0/324 (0%) Strand=Plus/Plus Query 868678 GGACGAGACGTGCGCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCC 868737 |||| |||| ||||| ||||||||| |||||| |||||| |||||||||||||| Sbjct 1958613 GGACATGACGGAGGCCTTCTGGTACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCC 1958672 Query 868738 CTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCA 868797 || ||| ||||| | ||||||||| ||| ||||||| | | |||| ||| | Sbjct 1958673 CTGGAGGGAGATGAGCTCCATCCAGTCGAAGGGGTTGGCGGCGTGGTAGATCTTGGGGTG 1958732 Query 868798 TCCGAGCGACGCGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGC 868857 ||||| | ||| |||||||||||||| ||||||||||||||| ||||||| | Sbjct 1958733 GCCGAGGGCGAGGAGGAGGCGGTCGGCGACGAACTCGATGTACTGGGCCATGAGGGCCTG 1958792 Query 868858 GTTCATGCCGATGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGAC 868917 |||||||||| |||||| || || | |||| || || || |||||||||||| Sbjct 1958793 ATTCATGCCGACGAGCGCGCAGGGGAGGGCGTCGCAGACGAAGTCCCGCTCGATCTCGAC 1958852 Query 868918 GGCCTCGACGATGATCTGCCTGGGCACGTCGGCCGAGGGCTTGTTGACGAGCATCGTGTA 868977 ||| ||| ||| ||| | | | |||| | | | ||||| | ||| | | ||| Sbjct 1958853 GGCGTCGGCGACGATGGCGCGGAGGCGGTCGTCGGGGAGCTTGGAGCGGAGGAGGGAGTA 1958912 Query 868978 GAGCAGGCAGGCAAAGTCGCAGTG 869001 ||| |||||||| ||||||||||| Sbjct 1958913 GAGGAGGCAGGCGAAGTCGCAGTG 1958936 Score = 114 bits (126), Expect = 2e-19 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || |||||| | | || ||||| |||| ||||||||||| || | | || Sbjct 7411020 GCTTGGCGAGCTCGCCGGGGAGGACGAGGCGGACGGACGTCTGGATCTCCCGGGAGGTGA 7410961 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || |||||| || | || |||||| |||||| | ||| |||| | Sbjct 7410960 TGGTCGGCTTCTTGTTGTAGCGAGCGAGACGGGAGGCCTCCTGGGCGAGCTTCTCGAAGA 7410901 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||| || |||||||| | ||| | |||| |||||||||| | |||||||| Sbjct 7410900 TGTCGTTGATGAAGCTGTTCATGATCCCCATGGCCTTGCTGGAGATGCCGATGTCGGGGT 7410841 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | ||||||||||| |||||| ||||| Sbjct 7410840 GGACCTGCTTGAGGACCTTGAAGATG 7410815 Score = 93.3 bits (102), Expect = 5e-13 Identities = 125/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 1254375 ACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGCCAGACGG 1254434 |||| ||||||||||| || | | || ||| |||||| | | ||||| ||| Sbjct 7368841 ACGGACGTCTGGATCTCCCGGGAGGTAATGGTGGGCTTCTTGTTGTACCGTGCCAGGCGG 7368900 Query 1254435 CCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATC 1254494 |||||| | ||| |||| |||||||||| || |||||||| | ||| Sbjct 7368901 GAGGCCTCCTGGGCGAGCTTCTCGAAGATGTCGTTGATGAAGCTGTTCATGATCCCCATG 7368960 Query 1254495 GACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGATG 1254548 | |||| |||||||||| | ||||||||| ||||||||||| |||||| ||||| Sbjct 7368961 GCCTTGCTGGAGATGCCGATGTCGGGGTGGACCTGCTTGAGGACCTTGAAGATG 7369014 >seq2 Length=11374105 Score = 105 bits (116), Expect = 8e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || ||| | | || ||||| |||| |||||||||||| || | | || Sbjct 10095370 GCTTGGCGAGCTCACCGGGGAGGACGAGGCGGACGGAGGTCTGGATCTCCCGGGAGGTGA 10095311 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| |||||| || | || |||||| ||||| ||| |||| | Sbjct 10095310 TGGTGGGCTTCTTGTTGTAGCGGGCGAGACGGGACGCCTCCTGAGCGAGCTTCTCGAAGA 10095251 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||| || |||||||| ||| | |||| |||||||||| | |||||||| Sbjct 10095250 TGTCGTTGATGAAGCTGTTCATGATGCCCATGGCCTTGCTGGAGATGCCGATGTCGGGGT 10095191 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | |||||||| ||||||||| ||||| Sbjct 10095190 GGACCTGCTTCAGCACCTTGAAGATG 10095165 >seq5 Length=8147712 Score = 102 bits (112), Expect = 1e-15 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || ||| | | || ||||| |||| |||||||||||| || | | || Sbjct 7684009 GCTTGGCGAGCTCCCCGGGGAGGACGAGGCGAACGGAGGTCTGGATCTCCCGGGAGGTGA 7683950 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| |||||| | | || || ||| |||||| ||| |||| | Sbjct 7683949 TGGTGGGCTTCTTGTTGTACCGGGCGAGGCGGGAGGCCTCCTGAGCGAGCTTCTCGAAGA 7683890 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| | || |||||||| | ||| | |||| |||||||||| | |||||||| Sbjct 7683889 TGTCGTTAATGAAGCTGTTCATGATCCCCATGGCCTTGCTGGAGATGCCGATGTCGGGGT 7683830 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | |||||||| ||||||||| ||||| Sbjct 7683829 GGACCTGCTTCAGCACCTTGAAGATG 7683804 >seq18 Length=4131207 Score = 100 bits (110), Expect = 3e-15 Identities = 91/115 (79%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || || |||||||| |||| ||| ||||| || || ||| || | ||||| || Sbjct 1325972 GCGGCGAACTACCTGAACATAAAGAGCCTGCTGGACCTGACCTGCCAGACGGTGGCGGAC 1325913 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300 ||||||||||| ||| |||| |||||||||||||||||||| ||||||||| ||| Sbjct 1325912 ATGATCAAGGGGAAGACGCCGGAGGAGATCCGCAAGACCTTCAACATCAAGAACG 1325858 Score = 87.8 bits (96), Expect = 2e-11 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 1574109 ACGTCGGCGGCCCAGCAGGCCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGC 1574168 ||||| | || |||||||| || ||| |||||||||| || | | ||| || || Sbjct 2046129 ACGTCTGGAGCACAGCAGGCTCTTCGGAGGACCATGGAAATATACTCGAGCACCACTCGA 2046070 Query 1574169 TTTGCCCTGGCGTGCAACACGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGCTGCGCC 1574228 ||||||||||| |||||||| || |||| | |||||||| || |||| || | ||||| Sbjct 2046069 TTTGCCCTGGCATGCAACACTTCTTCGAAGATCATCGAGCCCATCCAGAGCAGATGCGCG 2046010 Query 1574229 ATTCTGCGCtt 1574239 | ||||||| Sbjct 2046009 CTCGTGCGCTT 2045999 >seq8 Length=7641483 Score = 86.0 bits (94), Expect = 8e-11 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || || ||||| || |||||||| |||||| || || ||| || | || || || Sbjct 1441471 GCTGCAAACTATCTGAACATCAAGAGTCTGCTTGACCTGACCTGCCAGACCGTCGCAGAC 1441530 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300 |||||||| || ||| | |||||||||||| | |||||||| ||||||||| ||| Sbjct 1441531 ATGATCAAAGGGAAGACCCCCGAGGAGATCAGGAAGACCTTCAACATCAAGAACG 1441585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107137558706340