Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17]
20 sequences; 136,670,443 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq16 105 6e-18
seq7 100 3e-16
seq2 100 3e-16
seq3 84.2 2e-11
>seq16
Length=4450370
Score = 105 bits (116), Expect = 6e-18
Identities = 149/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
|||||||||||| | || || || ||||| || || || ||| | || || || || |
Sbjct 3338303 GATGCAGATCTTCGTCAAGACTCTTACCGGCAAGACCATCACGYTGGAGGTGGAGTCCTC 3338362
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
||||| | || | || || |||||||| ||||| || || || || || || ||
Sbjct 3338363 GGACACCATCGACAACGTGAAGGCTAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCA 3338422
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
|| ||| ||||||| |||||||| ||||||||||| | | | | | || |||||
Sbjct 3338423 GCAGCGTCTGATCTTCGCCGGGAAGCAGCTGGAGGACGGCCGCACCCTCGCCGACTATAA 3338482
Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912
||| || ||||| || || || ||| ||||
Sbjct 3338483 CATCCAGAAGGAGTCCACGCTCCACCTGGT 3338512
>seq7
Length=7914316
Score = 100 bits (110), Expect = 3e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | || || || || || || || || |||||||| ||||| | |
Sbjct 4181103 ATGCAGATCTTCGTGAAGACCCTGACGGGGAAGACGATCACGCTCGAGGTAGAGTCTTCT 4181162
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || |||||||| ||| | || || || || || || ||
Sbjct 4181163 GACACTATCGACAATGTGAAGGCCAAGATCCAGGACRAGGAGGGGATCCCGCCGGACCAG 4181222
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| || | ||||| |||||||| ||||| ||||| ||||| | | || || ||
Sbjct 4181223 CAGCGGCTCATCTTCGCCGGGAAGCAGCTCGAGGACGGGAGAACTCTCGCCGACTACAAT 4181282
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
|| || ||||| ||||| || ||| | ||| | || ||||||| ||
Sbjct 4181283 ATCCAGAAGGAGTCGACGCTCCACCTCGTGCTCCGCCTGCGCGGTGG 4181329
>seq2
Length=11374105
Score = 100 bits (110), Expect = 3e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | || || || || || || || || |||||||| ||||| | |
Sbjct 483865 ATGCAGATCTTCGTGAAGACCCTGACGGGGAAGACGATCACGCTCGAGGTAGAGTCTTCT 483806
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || |||||||| ||| | || || || || || || ||
Sbjct 483805 GACACTATCGACAATGTGAAGGCCAAGATCCAGGACRAGGAGGGGATCCCGCCGGACCAG 483746
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| || | ||||| |||||||| ||||| ||||| ||||| | | || || ||
Sbjct 483745 CAGCGGCTCATCTTCGCCGGGAAGCAGCTCGAGGACGGGAGAACTCTCGCCGACTACAAT 483686
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
|| || ||||| ||||| || ||| | ||| | || ||||||| ||
Sbjct 483685 ATCCAGAAGGAGTCGACGCTCCACCTCGTGCTCCGCCTGCGCGGTGG 483639
>seq3
Length=8976907
Score = 84.2 bits (92), Expect = 2e-11
Identities = 112/156 (72%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
|||||||||||| | || || || ||||| || ||||| || || || || || || |
Sbjct 8500628 GATGCAGATCTTCGTGAAGACTCTCACCGGGAAGACTATCACCCTTGAGGTGGAGTCCTC 8500569
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
||| || | || | || || |||||||| ||||| || || || || || || ||
Sbjct 8500568 CGATACCATCGACAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCA 8500509
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA 24858
|| | ||||||| ||||| || |||||||||||
Sbjct 8500508 GCAGAGGCTGATCTTCGCCGGCAAGCAGCTGGAGGA 8500473
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449897487525600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |