Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq16 105 6e-18 seq7 100 3e-16 seq2 100 3e-16 seq3 84.2 2e-11 >seq16 Length=4450370 Score = 105 bits (116), Expect = 6e-18 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || || ||||| || || || ||| | || || || || | Sbjct 3338303 GATGCAGATCTTCGTCAAGACTCTTACCGGCAAGACCATCACGYTGGAGGTGGAGTCCTC 3338362 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||| ||||| || || || || || || || Sbjct 3338363 GGACACCATCGACAACGTGAAGGCTAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCA 3338422 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| ||||||| |||||||| ||||||||||| | | | | | || ||||| Sbjct 3338423 GCAGCGTCTGATCTTCGCCGGGAAGCAGCTGGAGGACGGCCGCACCCTCGCCGACTATAA 3338482 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 ||| || ||||| || || || ||| |||| Sbjct 3338483 CATCCAGAAGGAGTCCACGCTCCACCTGGT 3338512 >seq7 Length=7914316 Score = 100 bits (110), Expect = 3e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || |||||||| ||||| | | Sbjct 4181103 ATGCAGATCTTCGTGAAGACCCTGACGGGGAAGACGATCACGCTCGAGGTAGAGTCTTCT 4181162 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||| | || || || || || || || Sbjct 4181163 GACACTATCGACAATGTGAAGGCCAAGATCCAGGACRAGGAGGGGATCCCGCCGGACCAG 4181222 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | ||||| |||||||| ||||| ||||| ||||| | | || || || Sbjct 4181223 CAGCGGCTCATCTTCGCCGGGAAGCAGCTCGAGGACGGGAGAACTCTCGCCGACTACAAT 4181282 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| ||||| || ||| | ||| | || ||||||| || Sbjct 4181283 ATCCAGAAGGAGTCGACGCTCCACCTCGTGCTCCGCCTGCGCGGTGG 4181329 >seq2 Length=11374105 Score = 100 bits (110), Expect = 3e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || |||||||| ||||| | | Sbjct 483865 ATGCAGATCTTCGTGAAGACCCTGACGGGGAAGACGATCACGCTCGAGGTAGAGTCTTCT 483806 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||| | || || || || || || || Sbjct 483805 GACACTATCGACAATGTGAAGGCCAAGATCCAGGACRAGGAGGGGATCCCGCCGGACCAG 483746 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | ||||| |||||||| ||||| ||||| ||||| | | || || || Sbjct 483745 CAGCGGCTCATCTTCGCCGGGAAGCAGCTCGAGGACGGGAGAACTCTCGCCGACTACAAT 483686 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| ||||| || ||| | ||| | || ||||||| || Sbjct 483685 ATCCAGAAGGAGTCGACGCTCCACCTCGTGCTCCGCCTGCGCGGTGG 483639 >seq3 Length=8976907 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || || ||||| || ||||| || || || || || || | Sbjct 8500628 GATGCAGATCTTCGTGAAGACTCTCACCGGGAAGACTATCACCCTTGAGGTGGAGTCCTC 8500569 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||| || | || | || || |||||||| ||||| || || || || || || || Sbjct 8500568 CGATACCATCGACAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCA 8500509 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA 24858 || | ||||||| ||||| || ||||||||||| Sbjct 8500508 GCAGAGGCTGATCTTCGCCGGCAAGCAGCTGGAGGA 8500473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449897487525600