Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17]
20 sequences; 136,670,443 total letters
Query= NC_021924.1
Length=129052
Score E
Sequences producing significant alignments: (Bits) Value
seq19 111 1e-19
seq9 84.2 2e-11
>seq19
Length=3929835
Score = 111 bits (122), Expect = 1e-19
Identities = 206/300 (69%), Gaps = 2/300 (1%)
Strand=Plus/Plus
Query 34312 ATGAGCTCAGTCTCCGGGTTGTCACATTCCGGA-CACAACACAAACTTGCGGATGAAACC 34370
|||| ||| ||||| |||||| | || ||| | ||| ||| |||| ||||||
Sbjct 2800071 ATGATCTCCGTCTCGGGGTTGCCGCAG-CCGTAGCACTGCACGTACTTCTTGATGAAGTT 2800129
Query 34371 ATCAAGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTT 34430
|| ||||| | | ||| | | |||||||| |||||||| | | | || |
Sbjct 2800130 CTCCAGCAGCTGGGCCAGCTTCGCCGTGTCGTGGGCCCCGTTGACCAGGGAGACGCCGGT 2800189
Query 34431 TTTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAAT 34490
|| | || | || | || || || |||||||| ||||||||||| || | |||
Sbjct 2800190 CTTCTCGTCAAACTTTGACTGGGCCCCGAGCTCGCAGCCGAAGTACTTGGTGGTGTAGGC 2800249
Query 34491 GGCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCC 34550
||| || || | || ||||||||||| || ||||||||| | | |||||||||||
Sbjct 2800250 GGCGGGGCGGGCCAGGGCCTTGGCGATGTCCACCATGTTGACCACGTTGGTCTTGATGCC 2800309
Query 34551 GTTGCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTC 34610
||| ||| || |||| ||||| || || ||||| |||||||||||||| || ||
Sbjct 2800310 GTTCCCCCGGCCCTCGATCTTGGTCACCATCCGGGGCATCTTGTAGCGGTAGAAGGCATC 2800369
>seq9
Length=6991192
Score = 84.2 bits (92), Expect = 2e-11
Identities = 168/249 (67%), Gaps = 0/249 (0%)
Strand=Plus/Minus
Query 34362 GATGAAACCATCAAGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAA 34421
|||||| | || |||||| | | ||| || |||||||| ||| ||||| | |
Sbjct 4851570 GATGAAGGCCTCGAGCAGGGCGGAGAGCTTCTGGGTGTCGTGGGCGCCATTGACCAGAGA 4851511
Query 34422 TCGTTCGTTTTTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGT 34481
|| | || | |||| || | || || || |||||||| ||||||||||||||
Sbjct 4851510 GACCCCGGTCTTCTCGTCGAACTTGGACTGGGCCCCGAGCTCGCAGCCGAAGTACTTTGT 4851451
Query 34482 CGGGTAAATGGCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGT 34541
||| ||| || || | || |||||| | || || ||| ||||| | | ||
Sbjct 4851450 GATGTAGGCGGCGGGCCGCGCCAGGGCCTTGCCTATGTCCACCATATTGACCACGTTGGT 4851391
Query 34542 CTTGATGCCGTTGCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTA 34601
|||||||||||| || ||||| | ||||| | || || ||||| ||||| | |||
Sbjct 4851390 CTTGATGCCGTTCCCGCGCCCTTCTATCTTGGTGACCATCCGGGGCATCTTGTACCTGTA 4851331
Query 34602 GAACGCGTC 34610
||| || ||
Sbjct 4851330 GAAGGCATC 4851322
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 412841499369860
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |