Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq19 111 1e-19 seq9 84.2 2e-11 >seq19 Length=3929835 Score = 111 bits (122), Expect = 1e-19 Identities = 206/300 (69%), Gaps = 2/300 (1%) Strand=Plus/Plus Query 34312 ATGAGCTCAGTCTCCGGGTTGTCACATTCCGGA-CACAACACAAACTTGCGGATGAAACC 34370 |||| ||| ||||| |||||| | || ||| | ||| ||| |||| |||||| Sbjct 2800071 ATGATCTCCGTCTCGGGGTTGCCGCAG-CCGTAGCACTGCACGTACTTCTTGATGAAGTT 2800129 Query 34371 ATCAAGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTT 34430 || ||||| | | ||| | | |||||||| |||||||| | | | || | Sbjct 2800130 CTCCAGCAGCTGGGCCAGCTTCGCCGTGTCGTGGGCCCCGTTGACCAGGGAGACGCCGGT 2800189 Query 34431 TTTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAAT 34490 || | || | || | || || || |||||||| ||||||||||| || | ||| Sbjct 2800190 CTTCTCGTCAAACTTTGACTGGGCCCCGAGCTCGCAGCCGAAGTACTTGGTGGTGTAGGC 2800249 Query 34491 GGCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCC 34550 ||| || || | || ||||||||||| || ||||||||| | | ||||||||||| Sbjct 2800250 GGCGGGGCGGGCCAGGGCCTTGGCGATGTCCACCATGTTGACCACGTTGGTCTTGATGCC 2800309 Query 34551 GTTGCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTC 34610 ||| ||| || |||| ||||| || || ||||| |||||||||||||| || || Sbjct 2800310 GTTCCCCCGGCCCTCGATCTTGGTCACCATCCGGGGCATCTTGTAGCGGTAGAAGGCATC 2800369 >seq9 Length=6991192 Score = 84.2 bits (92), Expect = 2e-11 Identities = 168/249 (67%), Gaps = 0/249 (0%) Strand=Plus/Minus Query 34362 GATGAAACCATCAAGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAA 34421 |||||| | || |||||| | | ||| || |||||||| ||| ||||| | | Sbjct 4851570 GATGAAGGCCTCGAGCAGGGCGGAGAGCTTCTGGGTGTCGTGGGCGCCATTGACCAGAGA 4851511 Query 34422 TCGTTCGTTTTTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGT 34481 || | || | |||| || | || || || |||||||| |||||||||||||| Sbjct 4851510 GACCCCGGTCTTCTCGTCGAACTTGGACTGGGCCCCGAGCTCGCAGCCGAAGTACTTTGT 4851451 Query 34482 CGGGTAAATGGCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGT 34541 ||| ||| || || | || |||||| | || || ||| ||||| | | || Sbjct 4851450 GATGTAGGCGGCGGGCCGCGCCAGGGCCTTGCCTATGTCCACCATATTGACCACGTTGGT 4851391 Query 34542 CTTGATGCCGTTGCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTA 34601 |||||||||||| || ||||| | ||||| | || || ||||| ||||| | ||| Sbjct 4851390 CTTGATGCCGTTCCCGCGCCCTTCTATCTTGGTGACCATCCGGGGCATCTTGTACCTGTA 4851331 Query 34602 GAACGCGTC 34610 ||| || || Sbjct 4851330 GAAGGCATC 4851322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412841499369860