Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17]
20 sequences; 136,670,443 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq7 228 1e-53
seq5 156 7e-32
seq2 147 3e-29
seq18 96.9 5e-14
>seq7
Length=7914316
Score = 228 bits (252), Expect = 1e-53
Identities = 246/325 (76%), Gaps = 8/325 (2%)
Strand=Plus/Plus
Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400
|| |||||||| ||| | |||||| ||| |||||||||||||||||||||||||
Sbjct 1958941 CCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGGCCGCGCTTC 1959000
Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460
|||||||| |||||||| ||||| ||||| ||||| ||||||||||||||| ||| |||
Sbjct 1959001 TTGAGCCAGAAGATGGCGCAGAAGCTGCCGGAGAAGAAGATGCCCTCGACGCAGGCGAAG 1959060
Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTC-CAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519
||||||| |||||||| || | || ||| || |||||| | |||||
Sbjct 1959061 GCGACGAGGCGCTCGGCGAAGGACTCGGAGG-------AGTCGATCCAGCGGAGGGCCCA 1959113
Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTC 794579
|| ||||| ||| |||| || ||||| | |||||| |||||| || |||| |
Sbjct 1959114 GTCGGCCTTGCGGGCCACGCAGGGGACGGTGTCCACGGCGCGGAAGAGGCGGGCCTTGGC 1959173
Query 794580 GACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTC 794639
| | |||||||| |||||| || | |||||| ||| |||| ||||||||||| ||
Sbjct 1959174 CTCGGAGTCCTTGATGTAGGTCTCCAGGAGGAGGCTGTACATCTCGGAGTGGATGTTCTC 1959233
Query 794640 GATGGCGATCTGGAAGCCATAAAAG 794664
|||||||||||||||||| || |||
Sbjct 1959234 GATGGCGATCTGGAAGCCGTAGAAG 1959258
Score = 210 bits (232), Expect = 3e-48
Identities = 211/272 (78%), Gaps = 7/272 (3%)
Strand=Plus/Plus
Query 796149 GGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCC 796208
|||||||| || ||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1959264 GGCCTCGGCGACCTGGACCTCCTTCATGAAGCGGCCSGCCAGGTTCTCGAGCACGATGCC 1959323
Query 796209 GTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAG 796268
|||| ||| ||||| |||||||||||||| |||| ||||| ||||||||| || ||||
Sbjct 1959324 GTCGGAGGCCGCGAAGAAGGCGAGGACGTGGGTGATGAAGTGGCGCTCGTCGGCGGTGAG 1959383
Query 796269 ---CGAGACCCAGTGGACCG--TGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAG 796323
| ||||||| ||| |||| | |||||| |||||||| || ||||| |||
Sbjct 1959384 GTCCTGCTCCCAGTG--CCGGAGGTCGTGGGAGAGGTCCACCTCCTCCGCCGTCCAGAAG 1959441
Query 796324 GAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACA 796383
|| ||||| ||||| |||||||||||||| ||| | |||| | ||| |||||||
Sbjct 1959442 GACGCCTCCGCCTTCTTGTACATCTCCCAGATCTGCGGGTACCTGATCGGGAACATGCAG 1959501
Query 796384 AAGCGATTGGGGTTCTCGCGTAGCAGCGGCTC 796415
|| || | ||||||| | ||||| |||||
Sbjct 1959502 AACCGGTCGGGGTTCGCCGCCAGCAGGGGCTC 1959533
Score = 178 bits (196), Expect = 2e-38
Identities = 231/313 (74%), Gaps = 10/313 (3%)
Strand=Plus/Plus
Query 793908 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 793967
|||||||| |||||| |||||| |||||||||||||||| ||| ||||| | |||||||
Sbjct 1958635 TACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGGGAGATGAGCTCCATC 1958694
Query 793968 CACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA--GCGACGCAAGCAGGC 794025
|| ||| |||||||| | ||||| ||| | |||| |||| | || ||||
Sbjct 1958695 CAGTCGAAGGGGTTGGCGGCGTGGTAGATCTTGGGGTGGCCGAGGGCGAGG--AGGAGGC 1958752
Query 794026 GGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCA 794085
||||||||||||| || ||||||||| ||||||||| |||||||||| ||||||
Sbjct 1958753 GGTCGGCGACGAACTCGATGTACTGGGCCATGAGGGCCTGATTCATGCCGACGAGCGCGC 1958812
Query 794086 CGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGATGATGAT-CTGC 794144
||| || | |||| ||| || || ||||||||||||||| ||| || ||| ||
Sbjct 1958813 AGGGGAGGGCGTCGCAGACGAAGTCCCGCTCGATCTCGACGGCGTCGGCGACGATGGCGC 1958872
Query 794145 CTGGGC--ACGTCGGACGACGGCTTGTCGACGAGCATCGTGTAGAGCAGGCAGGCAAAGT 794202
||| |||||| || ||||| | ||| | | |||||| |||||||| ||||
Sbjct 1958873 GGAGGCGGTCGTCGG-GGA--GCTTGGAGCGGAGGAGGGAGTAGAGGAGGCAGGCGAAGT 1958929
Query 794203 CGCAATGCAGACC 794215
|||| || || ||
Sbjct 1958930 CGCAGTGGAGGCC 1958942
Score = 161 bits (178), Expect = 2e-33
Identities = 179/239 (75%), Gaps = 0/239 (0%)
Strand=Plus/Minus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
|| ||||||||||||||||||| ||||| ||||| |||||| |||| || |||||| | |
Sbjct 7411059 TGAACTTGGTGACGGCCTTGGTGCCCTCGGAGACAGCGTGCTTGGCGAGCTCGCCGGGGA 7411000
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
|| ||||| |||| ||||||||||| |||| | ||| || |||||| ||
Sbjct 7410999 GGACGAGGCGGACGGACGTCTGGATCTCCCGGGAGGTGATGGTCGGCTTCTTGTTGTAGC 7410940
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
| || || ||| |||||| | ||| |||| |||||||||| || |||||
Sbjct 7410939 GAGCGAGACGGGAGGCCTCCTGGGCGAGCTTCTCGAAGATGTCGTTGATGAAGCTGTTCA 7410880
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708
||||| ||| | ||| |||||||||| | ||||||||| ||||||||||| ||||||
Sbjct 7410879 TGATCCCCATGGCCTTGCTGGAGATGCCGATGTCGGGGTGGACCTGCTTGAGGACCTTG 7410821
Score = 138 bits (152), Expect = 2e-26
Identities = 172/236 (73%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 1485473 ACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGA 1485532
|||||||||| || || || ||||| |||||||||||| | || || |||||| | | |
Sbjct 7368773 ACTTGGTGACAGCTTTTGTGCCCTCGGAGACGGCGTGCTTCGCAAGCTCGCCGGGGAGTA 7368832
Query 1485533 TCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCG 1485592
|| | |||| ||||||||||| |||| | || ||| |||||| || |
Sbjct 7368833 CGAGCCTGACGGACGTCTGGATCTCCCGGGAGGTAATGGTGGGCTTCTTGTTGTACCGTG 7368892
Query 1485593 CCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGA 1485652
|||||||| |||||| | ||| |||| |||||||||| || ||||||||
Sbjct 7368893 CCAGGCGGGAGGCCTCCTGGGCGAGCTTCTCGAAGATGTCGTTGATGAAGCTGTTCATGA 7368952
Query 1485653 TCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708
|| ||| | ||| |||||||||| | ||||||||| ||||||||||| ||||||
Sbjct 7368953 TCCCCATGGCCTTGCTGGAGATGCCGATGTCGGGGTGGACCTGCTTGAGGACCTTG 7369008
>seq5
Length=8147712
Score = 156 bits (172), Expect = 7e-32
Identities = 178/239 (74%), Gaps = 0/239 (0%)
Strand=Plus/Minus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
|| ||||||| ||||||||||| ||||| |||||||||||| |||| || || ||| | |
Sbjct 7684048 TGAACTTGGTCACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCGAGCTCCCCGGGGA 7683989
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
|| ||||| |||| |||||||||||| |||| | ||| ||| |||||| |
Sbjct 7683988 GGACGAGGCGAACGGAGGTCTGGATCTCCCGGGAGGTGATGGTGGGCTTCTTGTTGTACC 7683929
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
| || |||||| |||||| ||| |||| |||||||| | || |||||
Sbjct 7683928 GGGCGAGGCGGGAGGCCTCCTGAGCGAGCTTCTCGAAGATGTCGTTAATGAAGCTGTTCA 7683869
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708
||||| ||| | ||| |||||||||| | ||||||||| |||||||| |||||||||
Sbjct 7683868 TGATCCCCATGGCCTTGCTGGAGATGCCGATGTCGGGGTGGACCTGCTTCAGCACCTTG 7683810
>seq2
Length=11374105
Score = 147 bits (162), Expect = 3e-29
Identities = 176/239 (74%), Gaps = 0/239 (0%)
Strand=Plus/Minus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
|| |||||||||| |||||||| ||||| |||||||| ||| |||| || || ||| | |
Sbjct 10095409 TGAACTTGGTGACCGCCTTGGTGCCCTCGGAGACGGCATGCTTGGCGAGCTCACCGGGGA 10095350
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
|| ||||| |||| |||||||||||| |||| | ||| ||| |||||| ||
Sbjct 10095349 GGACGAGGCGGACGGAGGTCTGGATCTCCCGGGAGGTGATGGTGGGCTTCTTGTTGTAGC 10095290
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
| || || ||| ||||| ||| |||| |||||||||| || |||||
Sbjct 10095289 GGGCGAGACGGGACGCCTCCTGAGCGAGCTTCTCGAAGATGTCGTTGATGAAGCTGTTCA 10095230
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708
|||| ||| | ||| |||||||||| | ||||||||| |||||||| |||||||||
Sbjct 10095229 TGATGCCCATGGCCTTGCTGGAGATGCCGATGTCGGGGTGGACCTGCTTCAGCACCTTG 10095171
>seq18
Length=4131207
Score = 96.9 bits (106), Expect = 5e-14
Identities = 100/131 (76%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 2019246 ACGTCGGCGGCCCAGCAGGCCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGG 2019305
||||| | || |||||||| || || ||||||||||| ||| | | ||| || ||
Sbjct 2046129 ACGTCTGGAGCACAGCAGGCTCTTCGGAGGACCATGGAAATATACTCGAGCACCACTCGA 2046070
Query 2019306 TTTGCGCTGGCCTGCAACACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCC 2019365
||||| ||||| |||||||| || |||| | ||||||| || |||||||| | |||||
Sbjct 2046069 TTTGCCCTGGCATGCAACACTTCTTCGAAGATCATCGAGCCCATCCAGAGCAGATGCGCG 2046010
Query 2019366 ATCTTGCGCTT 2019376
|| |||||||
Sbjct 2046009 CTCGTGCGCTT 2045999
Score = 91.5 bits (100), Expect = 2e-12
Identities = 89/115 (77%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706
|| || |||||||| |||| ||| ||| || || || ||| |||| ||||| ||
Sbjct 1325972 GCGGCGAACTACCTGAACATAAAGAGCCTGCTGGACCTGACCTGCCAGACGGTGGCGGAC 1325913
Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCAAGTACG 2035761
| |||||||| ||| |||| ||||| |||||||||||||| ||||||||| |||
Sbjct 1325912 ATGATCAAGGGGAAGACGCCGGAGGAGATCCGCAAGACCTTCAACATCAAGAACG 1325858
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7916244272508780
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |