Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq7 228 1e-53 seq5 156 7e-32 seq2 147 3e-29 seq18 96.9 5e-14 >seq7 Length=7914316 Score = 228 bits (252), Expect = 1e-53 Identities = 246/325 (76%), Gaps = 8/325 (2%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || |||||||| ||| | |||||| ||| ||||||||||||||||||||||||| Sbjct 1958941 CCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGGCCGCGCTTC 1959000 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 |||||||| |||||||| ||||| ||||| ||||| ||||||||||||||| ||| ||| Sbjct 1959001 TTGAGCCAGAAGATGGCGCAGAAGCTGCCGGAGAAGAAGATGCCCTCGACGCAGGCGAAG 1959060 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTC-CAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519 ||||||| |||||||| || | || ||| || |||||| | ||||| Sbjct 1959061 GCGACGAGGCGCTCGGCGAAGGACTCGGAGG-------AGTCGATCCAGCGGAGGGCCCA 1959113 Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTC 794579 || ||||| ||| |||| || ||||| | |||||| |||||| || |||| | Sbjct 1959114 GTCGGCCTTGCGGGCCACGCAGGGGACGGTGTCCACGGCGCGGAAGAGGCGGGCCTTGGC 1959173 Query 794580 GACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTC 794639 | | |||||||| |||||| || | |||||| ||| |||| ||||||||||| || Sbjct 1959174 CTCGGAGTCCTTGATGTAGGTCTCCAGGAGGAGGCTGTACATCTCGGAGTGGATGTTCTC 1959233 Query 794640 GATGGCGATCTGGAAGCCATAAAAG 794664 |||||||||||||||||| || ||| Sbjct 1959234 GATGGCGATCTGGAAGCCGTAGAAG 1959258 Score = 210 bits (232), Expect = 3e-48 Identities = 211/272 (78%), Gaps = 7/272 (3%) Strand=Plus/Plus Query 796149 GGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCC 796208 |||||||| || ||||||||||||||||||||||| ||||||||||| ||||||||| Sbjct 1959264 GGCCTCGGCGACCTGGACCTCCTTCATGAAGCGGCCSGCCAGGTTCTCGAGCACGATGCC 1959323 Query 796209 GTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAG 796268 |||| ||| ||||| |||||||||||||| |||| ||||| ||||||||| || |||| Sbjct 1959324 GTCGGAGGCCGCGAAGAAGGCGAGGACGTGGGTGATGAAGTGGCGCTCGTCGGCGGTGAG 1959383 Query 796269 ---CGAGACCCAGTGGACCG--TGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAG 796323 | ||||||| ||| |||| | |||||| |||||||| || ||||| ||| Sbjct 1959384 GTCCTGCTCCCAGTG--CCGGAGGTCGTGGGAGAGGTCCACCTCCTCCGCCGTCCAGAAG 1959441 Query 796324 GAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACA 796383 || ||||| ||||| |||||||||||||| ||| | |||| | ||| ||||||| Sbjct 1959442 GACGCCTCCGCCTTCTTGTACATCTCCCAGATCTGCGGGTACCTGATCGGGAACATGCAG 1959501 Query 796384 AAGCGATTGGGGTTCTCGCGTAGCAGCGGCTC 796415 || || | ||||||| | ||||| ||||| Sbjct 1959502 AACCGGTCGGGGTTCGCCGCCAGCAGGGGCTC 1959533 Score = 178 bits (196), Expect = 2e-38 Identities = 231/313 (74%), Gaps = 10/313 (3%) Strand=Plus/Plus Query 793908 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 793967 |||||||| |||||| |||||| |||||||||||||||| ||| ||||| | ||||||| Sbjct 1958635 TACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGGGAGATGAGCTCCATC 1958694 Query 793968 CACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA--GCGACGCAAGCAGGC 794025 || ||| |||||||| | ||||| ||| | |||| |||| | || |||| Sbjct 1958695 CAGTCGAAGGGGTTGGCGGCGTGGTAGATCTTGGGGTGGCCGAGGGCGAGG--AGGAGGC 1958752 Query 794026 GGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCA 794085 ||||||||||||| || ||||||||| ||||||||| |||||||||| |||||| Sbjct 1958753 GGTCGGCGACGAACTCGATGTACTGGGCCATGAGGGCCTGATTCATGCCGACGAGCGCGC 1958812 Query 794086 CGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGATGATGAT-CTGC 794144 ||| || | |||| ||| || || ||||||||||||||| ||| || ||| || Sbjct 1958813 AGGGGAGGGCGTCGCAGACGAAGTCCCGCTCGATCTCGACGGCGTCGGCGACGATGGCGC 1958872 Query 794145 CTGGGC--ACGTCGGACGACGGCTTGTCGACGAGCATCGTGTAGAGCAGGCAGGCAAAGT 794202 ||| |||||| || ||||| | ||| | | |||||| |||||||| |||| Sbjct 1958873 GGAGGCGGTCGTCGG-GGA--GCTTGGAGCGGAGGAGGGAGTAGAGGAGGCAGGCGAAGT 1958929 Query 794203 CGCAATGCAGACC 794215 |||| || || || Sbjct 1958930 CGCAGTGGAGGCC 1958942 Score = 161 bits (178), Expect = 2e-33 Identities = 179/239 (75%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||||||||||||||| ||||| ||||| |||||| |||| || |||||| | | Sbjct 7411059 TGAACTTGGTGACGGCCTTGGTGCCCTCGGAGACAGCGTGCTTGGCGAGCTCGCCGGGGA 7411000 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || ||||| |||| ||||||||||| |||| | ||| || |||||| || Sbjct 7410999 GGACGAGGCGGACGGACGTCTGGATCTCCCGGGAGGTGATGGTCGGCTTCTTGTTGTAGC 7410940 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || || ||| |||||| | ||| |||| |||||||||| || ||||| Sbjct 7410939 GAGCGAGACGGGAGGCCTCCTGGGCGAGCTTCTCGAAGATGTCGTTGATGAAGCTGTTCA 7410880 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| ||| | ||| |||||||||| | ||||||||| ||||||||||| |||||| Sbjct 7410879 TGATCCCCATGGCCTTGCTGGAGATGCCGATGTCGGGGTGGACCTGCTTGAGGACCTTG 7410821 Score = 138 bits (152), Expect = 2e-26 Identities = 172/236 (73%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 1485473 ACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGA 1485532 |||||||||| || || || ||||| |||||||||||| | || || |||||| | | | Sbjct 7368773 ACTTGGTGACAGCTTTTGTGCCCTCGGAGACGGCGTGCTTCGCAAGCTCGCCGGGGAGTA 7368832 Query 1485533 TCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCG 1485592 || | |||| ||||||||||| |||| | || ||| |||||| || | Sbjct 7368833 CGAGCCTGACGGACGTCTGGATCTCCCGGGAGGTAATGGTGGGCTTCTTGTTGTACCGTG 7368892 Query 1485593 CCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGA 1485652 |||||||| |||||| | ||| |||| |||||||||| || |||||||| Sbjct 7368893 CCAGGCGGGAGGCCTCCTGGGCGAGCTTCTCGAAGATGTCGTTGATGAAGCTGTTCATGA 7368952 Query 1485653 TCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 || ||| | ||| |||||||||| | ||||||||| ||||||||||| |||||| Sbjct 7368953 TCCCCATGGCCTTGCTGGAGATGCCGATGTCGGGGTGGACCTGCTTGAGGACCTTG 7369008 >seq5 Length=8147712 Score = 156 bits (172), Expect = 7e-32 Identities = 178/239 (74%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||| ||||||||||| ||||| |||||||||||| |||| || || ||| | | Sbjct 7684048 TGAACTTGGTCACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCGAGCTCCCCGGGGA 7683989 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || ||||| |||| |||||||||||| |||| | ||| ||| |||||| | Sbjct 7683988 GGACGAGGCGAACGGAGGTCTGGATCTCCCGGGAGGTGATGGTGGGCTTCTTGTTGTACC 7683929 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || |||||| |||||| ||| |||| |||||||| | || ||||| Sbjct 7683928 GGGCGAGGCGGGAGGCCTCCTGAGCGAGCTTCTCGAAGATGTCGTTAATGAAGCTGTTCA 7683869 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| ||| | ||| |||||||||| | ||||||||| |||||||| ||||||||| Sbjct 7683868 TGATCCCCATGGCCTTGCTGGAGATGCCGATGTCGGGGTGGACCTGCTTCAGCACCTTG 7683810 >seq2 Length=11374105 Score = 147 bits (162), Expect = 3e-29 Identities = 176/239 (74%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || |||||||||| |||||||| ||||| |||||||| ||| |||| || || ||| | | Sbjct 10095409 TGAACTTGGTGACCGCCTTGGTGCCCTCGGAGACGGCATGCTTGGCGAGCTCACCGGGGA 10095350 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || ||||| |||| |||||||||||| |||| | ||| ||| |||||| || Sbjct 10095349 GGACGAGGCGGACGGAGGTCTGGATCTCCCGGGAGGTGATGGTGGGCTTCTTGTTGTAGC 10095290 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || || ||| ||||| ||| |||| |||||||||| || ||||| Sbjct 10095289 GGGCGAGACGGGACGCCTCCTGAGCGAGCTTCTCGAAGATGTCGTTGATGAAGCTGTTCA 10095230 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 |||| ||| | ||| |||||||||| | ||||||||| |||||||| ||||||||| Sbjct 10095229 TGATGCCCATGGCCTTGCTGGAGATGCCGATGTCGGGGTGGACCTGCTTCAGCACCTTG 10095171 >seq18 Length=4131207 Score = 96.9 bits (106), Expect = 5e-14 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 2019246 ACGTCGGCGGCCCAGCAGGCCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGG 2019305 ||||| | || |||||||| || || ||||||||||| ||| | | ||| || || Sbjct 2046129 ACGTCTGGAGCACAGCAGGCTCTTCGGAGGACCATGGAAATATACTCGAGCACCACTCGA 2046070 Query 2019306 TTTGCGCTGGCCTGCAACACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCC 2019365 ||||| ||||| |||||||| || |||| | ||||||| || |||||||| | ||||| Sbjct 2046069 TTTGCCCTGGCATGCAACACTTCTTCGAAGATCATCGAGCCCATCCAGAGCAGATGCGCG 2046010 Query 2019366 ATCTTGCGCTT 2019376 || ||||||| Sbjct 2046009 CTCGTGCGCTT 2045999 Score = 91.5 bits (100), Expect = 2e-12 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 || || |||||||| |||| ||| ||| || || || ||| |||| ||||| || Sbjct 1325972 GCGGCGAACTACCTGAACATAAAGAGCCTGCTGGACCTGACCTGCCAGACGGTGGCGGAC 1325913 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCAAGTACG 2035761 | |||||||| ||| |||| ||||| |||||||||||||| ||||||||| ||| Sbjct 1325912 ATGATCAAGGGGAAGACGCCGGAGGAGATCCGCAAGACCTTCAACATCAAGAACG 1325858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916244272508780