Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq16 131 1e-25 seq8 123 2e-23 seq18 98.7 6e-16 seq7 95.1 8e-15 seq2 95.1 8e-15 seq3 91.5 1e-13 >seq16 Length=4450370 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 |||||||| | | ||||||||||| | ||| ||||||||| ||||||||||| | Sbjct 3338530 CCTCCCCTGAGACGAAGGACCAGGTGGAGCGTGGACTCCTTCTGGATGTTATAGTCGGCG 3338471 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| |||| | || ||||| ||||| |||||||||||||| || |||||||| | || Sbjct 3338470 AGGGTGCGGCCGTCCTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGG 3338411 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | ||||||||||| | || || || ||| | || | || || ||| || Sbjct 3338410 ATGCCCTCCTTGTCCTGGATCTTAGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACC 3338351 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | || |||||||| || || || ||||| || ||||||||||| Sbjct 3338350 TCCARCGTGATGGTCTTGCCGGTAAGAGTCTTGACGAAGATCTGCAT 3338304 >seq8 Length=7641483 Score = 123 bits (136), Expect = 2e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||| | ||| ||||||||| ||||| ||||||| |||| | || | || Sbjct 6351908 AGCACGAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGCTAGGGTTCGGCCGTCC 6351967 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| |||||||||||||| || |||||||| | || | ||| |||||||| Sbjct 6351968 TCGAGCTGCTTCCCGGCGAAGATCAGCCGCTGCTGGTCCGGTGGTATCCCTTCCTTGTCC 6352027 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || | ||| || || | ||| || ||| Sbjct 6352028 TGGATCTTGGCCTTGACGTTGTCGATGGTGTCRGAAGACTCCACCTCGAGGGTGATCGTC 6352087 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || |||||||||||||| || || |||||||| Sbjct 6352088 TTCCCCGTGAGGGTCTTCACGAATATCTGCAT 6352119 >seq18 Length=4131207 Score = 98.7 bits (108), Expect = 6e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||| | ||||| ||||||||||| ||| ||||||||| ||||| ||||| | Sbjct 771089 CCCCCCCTGAGCCTCAAGACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCTGCA 771148 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || |||| | || ||||| ||||| || || || |||| || ||||||||| | || Sbjct 771149 AGAGTGCGGCCGTCCTCCAGCTGCTTCCCAGCAAATATCAATCTCTGCTGGTCTGGAGGG 771208 Query 34871 ACCCCCTCCTTGTC 34884 | ||||||||||| Sbjct 771209 ATGCCCTCCTTGTC 771222 >seq7 Length=7914316 Score = 95.1 bits (104), Expect = 8e-15 Identities = 140/197 (71%), Gaps = 8/197 (4%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| || || ||||| | || | | | | || || || ||||| |||||||| Sbjct 4181294 CTCCTTCTGGATATTGTAGTCGGCGAGAGTTCTCCCGTCCTCGAGCTGCTTCCCGGCGAA 4181235 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||| || || |||||||| |||| | |||||||| ||| | || || || || | Sbjct 4181234 GATGAGCCGCTGCTGGTCCGGCGGGATCCCCTCCTYGTCCTGGATCTTGGCCTTCAC--A 4181177 Query 34906 TGCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCT 34961 | | ||||| ||| | ||| || || | || || ||||| ||||| ||||||| Sbjct 4181176 T--TGTCGATAGTGTCAGAAGACTCTACCTCGAGCGTGATCGTCTTCCCCGTCAGGGTCT 4181119 Query 34962 TTACAAAGATCTGCATG 34978 | || |||||||||||| Sbjct 4181118 TCACGAAGATCTGCATG 4181102 >seq2 Length=11374105 Score = 95.1 bits (104), Expect = 8e-15 Identities = 140/197 (71%), Gaps = 8/197 (4%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| || || ||||| | || | | | | || || || ||||| |||||||| Sbjct 483674 CTCCTTCTGGATATTGTAGTCGGCGAGAGTTCTCCCGTCCTCGAGCTGCTTCCCGGCGAA 483733 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||| || || |||||||| |||| | |||||||| ||| | || || || || | Sbjct 483734 GATGAGCCGCTGCTGGTCCGGCGGGATCCCCTCCTYGTCCTGGATCTTGGCCTTCAC--A 483791 Query 34906 TGCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCT 34961 | | ||||| ||| | ||| || || | || || ||||| ||||| ||||||| Sbjct 483792 T--TGTCGATAGTGTCAGAAGACTCTACCTCGAGCGTGATCGTCTTCCCCGTCAGGGTCT 483849 Query 34962 TTACAAAGATCTGCATG 34978 | || |||||||||||| Sbjct 483850 TCACGAAGATCTGCATG 483866 >seq3 Length=8976907 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882 || ||||| ||||| |||||||||||||| | |||||||| | || | ||||||||| Sbjct 8500473 TCCTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGGGGGATGCCCTCCTTG 8500532 Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 || | || || |||||| | || | || || ||| || |||| ||| || Sbjct 8500533 TCCTGGATCTTCGCCTTGACGTTGTCGATGGTATCGGAGGACTCCACCTCAAGGGTGATA 8500592 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || ||||| ||||| || ||||||||||| Sbjct 8500593 GTCTTCCCGGTGAGAGTCTTCACGAAGATCTGCAT 8500627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325692720612380