Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq2 120 4e-22 seq6 109 7e-19 seq3 89.7 6e-13 >seq2 Length=11374105 Score = 120 bits (132), Expect = 4e-22 Identities = 130/170 (76%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 177885 TATATGGGACGTGAGTGGGAACTTTCATACCGTCTAGGTATGCGCCCCTGGATCTGTGTT 177944 || ||||| |||||||||||||| | |||| | |||||||| || ||||| |||| Sbjct 4329607 TACATGGGTCGTGAGTGGGAACTAAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGTT 4329666 Query 177945 GCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTTCTAG-TCTATCCTTTCGGTCA 178003 ||||| || || ||||| ||||| || | || || ||||| | |||| ||| | ||||| Sbjct 4329667 GCATATTCAGCTCCTGTAGCAGCTGCTACTGCTGT-TTTCTTGATCTACCCTATTGGTCA 4329725 Query 178004 AGGTTCATTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACT 178053 ||| || || |||| ||||||||| || || ||||||||||| |||| Sbjct 4329726 AGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACT 4329775 >seq6 Length=8045491 Score = 109 bits (120), Expect = 7e-19 Identities = 116/151 (77%), Gaps = 4/151 (3%) Strand=Plus/Plus Query 177981 TTTCTAG-TCTATCCTTTCGGTCAAGGTTCATTCTCCGATGCTATGCCTCTTGGTATCTC 178039 ||||| | |||| ||| | |||||||| || || |||| | || |||| || || || Sbjct 2591570 TTTCTTGATCTACCCTATTGGTCAAGGAAGTTTTTCTGATGGTTTGTCTCTAGGAATTTC 2591629 Query 178040 TGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCACCCGTT 178099 |||||| || |||| ||| |||||||| | ||||||||| ||||||||||||| || Sbjct 2591630 TGGTACATTCAACTTCATAATTGTATTCAAGACAGAACACA---TCCTTATGCACCCATT 2591686 Query 178100 CCACATGCTCGGTGTTGCTGGGGTATTCGGT 178130 ||||||| | || || ||||| |||||| || Sbjct 2591687 CCACATGTTAGGCGTAGCTGGTGTATTCTGT 2591717 >seq3 Length=8976907 Score = 89.7 bits (98), Expect = 6e-13 Identities = 150/213 (70%), Gaps = 9/213 (4%) Strand=Plus/Plus Query 177801 GAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT-CTT 177859 |||||||||| ||||| ||||| | || || || ||||||| | | || | || || Sbjct 715733 GAAGCCGCATATGTTGATTAGTGGTTATACAATGGCGGTCCTTACGAGCTAATTGTTCTA 715792 Query 177860 T----CACTTCCTTATCGGCAT--CTATGCATATATGGGACGTGAGTGGGAACTTTCATA 177913 | |||||| | | || | || ||| || |||| ||||||||||||||| | Sbjct 715793 TTCTACACTTCTTAMTTGGTGTAGCT-TGC-TACATGGATCGTGAGTGGGAACTTAGTTT 715850 Query 177914 CCGTCTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGCACCTGTTGCAGCAGCATC 177973 |||||| ||||||| || ||||| ||||||||| || || ||||| ||||| || | Sbjct 715851 CCGTCTGGGTATGCATCCTTGGATTGCTGTTGCATATTCAGCTCCTGTWGCAGCTGCTAC 715910 Query 177974 CGCAGTCTTTCTAGTCTATCCTTTCGGTCAAGG 178006 || || || | |||| | | | |||||||| Sbjct 715911 TGCTGTTTTATTGATCTACCTTATTGGTCAAGG 715943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605667048583200