Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq8 102 6e-16 >seq8 Length=7641483 Score = 102 bits (112), Expect = 6e-16 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || || | ||| ||||| | | |||||||||||| ||||||||||| || | | ||| Sbjct 7582218 TTGTTGTTAAGCCCATAAGAGAGAGCAGCAGCAGTGGGTTCATTAATGATACGCTGCACA 7582159 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 | ||| || | |||||| || |||||||| || || |||||||| | || || ||||| Sbjct 7582158 TCAAGCCCCGAAATTCTCCCCGCATCTTTTGTAGCCTGTCTTTGCGCGTCATTGAAATAA 7582099 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGT 282511 || ||||| || | || || | | || || |||| |||||| || |||| | Sbjct 7582098 GCTGGAACTGTGACCACTGCTTTCGAAACACTCTTACCAAGATAAGCCTCGGCAGTTTCT 7582039 Query 282512 TTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCT 282560 |||||||| | |||| | | | ||| || |||||||| |||| Sbjct 7582038 TTCATTTTTGTCAAAACAAAAGCTCCAATCTGACTAGGAGAATACTGCT 7581990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740629418084520