Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq7 167 2e-36 seq16 125 7e-24 seq2 125 7e-24 seq3 120 3e-22 seq8 118 1e-21 seq19 84.2 2e-11 >seq7 Length=7914316 Score = 167 bits (184), Expect = 2e-36 Identities = 341/500 (68%), Gaps = 10/500 (2%) Strand=Plus/Plus Query 120351 CTTGTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTT 120410 || ||||||||||||||| ||||| || ||||| || ||||||| | || ||| | Sbjct 1958631 CTGGTACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGGGAGATGAGCTC 1958690 Query 120411 CATAAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTGTACGAGCAG 120470 ||| | ||||| |||||| |||| || || || ||||| | | ||| || Sbjct 1958691 CATCCAGTCGAAGGGGTTGGCGGCGTGGTAGATCTTGGGGTGGCCGAGGGCGAGGAGGAG 1958750 Query 120471 TCGGTCCGCTACAAACTCAATGTACTCGCACATGGACTGCGCG-TTCATGCCCAGCAACG 120529 ||||| || || ||||| ||||||| | |||| | || | |||||||| | | || Sbjct 1958751 GCGGTCGGCGACGAACTCGATGTACTGGGCCATG-AGGGCCTGATTCATGCCGACGAGCG 1958809 Query 120530 CCACCGGCAACGCCGACGT-GAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATG 120588 | | || | | || || || || ||| ||| || || || || || || ||| Sbjct 1958810 CG-CAGGGGAGGGCGTCGCAGACGAAGTCCCGCTCGATCTCGACGGCGTCGGCGACGATG 1958868 Query 120589 GCGAGCATAGTGTGGCCGGGCATCTTGTGTTCGATGCGCGTTCGGTAGTACAGGCACGCA 120648 ||| | | || | |||| | |||| || | | | |||| ||||| || Sbjct 1958869 GCGCGGAGGCGGTCGTCGGGGAGCTTGGAGCGGAGGAGGGA---GTAGAGGAGGCAGGCG 1958925 Query 120649 AAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGGC 120708 ||||| ||| |||||||||||||| || || ||||||||| || || ||||||||| Sbjct 1958926 AAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGC 1958985 Query 120709 ATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGCCC 120768 |||| ||| | |||||| |||| |||||| |||||||| || ||||| | |||| Sbjct 1958986 ATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTGCCGGAGAAGAAGATGCCC 1959045 Query 120769 TCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCGATCCAC 120828 || ||| ||| |||||||| | ||||||||| || | | | | | ||||||||| Sbjct 1959046 TCGACGCAGGCGAAGGCGACGAGGCGCTCGGCGAAGGACTCGG---AGGAGTCGATCCAG 1959102 Query 120829 TTCATGGCCCACTCGGCCTT 120848 | |||||| |||||||| Sbjct 1959103 CGGAGGGCCCAGTCGGCCTT 1959122 Score = 125 bits (138), Expect = 7e-24 Identities = 148/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| ||||| |||||||| ||| | | || | ||||||||||||||| || Sbjct 4181299 GTCGACTCCTTCTGGATATTGTAGTCGGCGAGAGTTCTCCCGTCCTCGAGCTGCTTCCCG 4181240 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | ||||||||||||||||| || ||||| || |||| ||| |||||| ||| Sbjct 4181239 GCGAAGATGAGCCGCTGCTGGTCCGGCGGGATCCCCTCCTYGTCCTGGATCTTGGCCTTC 4181180 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | || | ||||| | | ||| || |||| |||| || || || ||||| || Sbjct 4181179 ACATTGTCGATAGTGTCAGAAGACTCTACCTCGAGCGTGATCGTCTTCCCCGTCAGGGTC 4181120 Query 133644 TTTACGAAAATCTGCATGGCT 133664 || ||||| |||||||||||| Sbjct 4181119 TTCACGAAGATCTGCATGGCT 4181099 >seq16 Length=4450370 Score = 125 bits (138), Expect = 7e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| ||||| || || || ||| | | ||| |||||| |||||||| || Sbjct 3338500 GTGGACTCCTTCTGGATGTTATAGTCGGCGAGGGTGCGGCCGTCCTCCAGCTGCTTCCCG 3338441 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || || ||||||||||| || |||||||| |||||||| |||||| ||| Sbjct 3338440 GCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTAGCCTTC 3338381 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | || | ||||| | || |||||| || | |||| ||| |||||||| ||||| Sbjct 3338380 ACGTTGTCGATGGTGTCCGAGGACTCCACCTCCARCGTGATGGTCTTGCCGGTAAGAGTC 3338321 Query 133644 TTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 3338320 TTGACGAAGATCTGCAT 3338304 >seq2 Length=11374105 Score = 125 bits (138), Expect = 7e-24 Identities = 148/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| ||||| |||||||| ||| | | || | ||||||||||||||| || Sbjct 483669 GTCGACTCCTTCTGGATATTGTAGTCGGCGAGAGTTCTCCCGTCCTCGAGCTGCTTCCCG 483728 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | ||||||||||||||||| || ||||| || |||| ||| |||||| ||| Sbjct 483729 GCGAAGATGAGCCGCTGCTGGTCCGGCGGGATCCCCTCCTYGTCCTGGATCTTGGCCTTC 483788 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | || | ||||| | | ||| || |||| |||| || || || ||||| || Sbjct 483789 ACATTGTCGATAGTGTCAGAAGACTCTACCTCGAGCGTGATCGTCTTCCCCGTCAGGGTC 483848 Query 133644 TTTACGAAAATCTGCATGGCT 133664 || ||||| |||||||||||| Sbjct 483849 TTCACGAAGATCTGCATGGCT 483869 >seq3 Length=8976907 Score = 120 bits (132), Expect = 3e-22 Identities = 120/156 (77%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 |||||| ||||||||||| ||| | || |||| ||||||||| || |||||||| ||||| Sbjct 8500472 GTCCTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGGGGGATGCCCTCCTT 8500531 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| |||||| ||||| | || | || |||| || |||||| || | ||||| Sbjct 8500532 GTCCTGGATCTTCGCCTTGACGTTGTCGATGGTATCGGAGGACTCCACCTCAAGGGTGAT 8500591 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || ||||| ||||| || ||||| |||||||| Sbjct 8500592 AGTCTTCCCGGTGAGAGTCTTCACGAAGATCTGCAT 8500627 >seq8 Length=7641483 Score = 118 bits (130), Expect = 1e-21 Identities = 147/200 (74%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGCTGCTTG 133520 ||| ||||| ||||| || ||||| || | | || || || |||||||||||||| Sbjct 6351922 GGTCGACTCCTTCTGGATGTTGTAGTCCGCTAGGGTTCGGCCG--TCCTCGAGCTGCTTC 6351979 Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 || ||| | || |||||||||||||| || || || ||||||||||| |||||| | Sbjct 6351980 CCGGCGAAGATCAGCCGCTGCTGGTCCGGTGGTATCCCTTCCTTGTCCTGGATCTTGGCC 6352039 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 |||| | || | ||||| | | |||||| |||| ||||| || || || || || Sbjct 6352040 TTGACGTTGTCGATGGTGTCRGAAGACTCCACCTCGAGGGTGATCGTCTTCCCCGTGAGG 6352099 Query 133641 GTTTTTACGAAAATCTGCAT 133660 || || ||||| |||||||| Sbjct 6352100 GTCTTCACGAATATCTGCAT 6352119 >seq19 Length=3929835 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 148817 CACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGAT 148876 || |||||| ||||| |||||||||||||| ||||| || ||| | |||| || | ||| Sbjct 2579346 CAAGGCGATCGAGGCGAGATTGCACACGGCAGTCTCCTCAGGGCTGGTGTATTCGATGAT 2579287 Query 148877 CTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTT 148936 ||| | ||||||||| | |||||| || | || || || ||||| || ||||| Sbjct 2579286 CTCTGTGCACAGATTTGAAGACTTGATCGTCCCAAGATTTTTCTGGTTGCTTTTCCTGTT 2579227 Query 148937 GCACGCGTCCT 148947 ||| | |||| Sbjct 2579226 GCAGGAATCCT 2579216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483420679144800