Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq8 95.1 3e-14 seq7 91.5 3e-13 seq2 91.5 3e-13 seq16 86.0 1e-11 >seq8 Length=7641483 Score = 95.1 bits (104), Expect = 3e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 |||||||| || || ||||| || || |||||||| | || ||||| ||| ||| Sbjct 6352116 CAGATATTCGTGAAGACCCTCACGGGGAAGACGATCACCCTCGAGGTGGAGTCTTCYGAC 6352057 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || ||||| || |||||| || Sbjct 6352056 ACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGGATACCACCGGACCAGCAG 6351997 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| | || || || | || | || || |||||| || Sbjct 6351996 CGGCTGATCTTCGCCGGGAAGCAGCTCGAGGACGGCCGAACCCTAGCGGACTACAACATC 6351937 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || || ||||| || Sbjct 6351936 CAGAAGGAGTCGACCCTGCACCTCGT 6351911 >seq7 Length=7914316 Score = 91.5 bits (100), Expect = 3e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || |||||||| | || || || ||||||||| |||| Sbjct 4181118 AAGACCCTGACGGGGAAGACGATCACGCTCGAGGTAGAGTCTTCTGACACTATCGACAAT 4181177 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || | || || || ||||||| || | || |||||| Sbjct 4181178 GTGAAGGCCAAGATCCAGGACRAGGAGGGGATCCCGCCGGACCAGCAGCGGCTCATCTTC 4181237 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| | || || || || ||| | ||||| ||||| ||||||| ||||| Sbjct 4181238 GCCGGGAAGCAGCTCGAGGACGGGAGAACTCTCGCCGACTACAATATCCAGAAGGAGTCG 4181297 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 4181298 ACGCTCCACCTCGT 4181311 >seq2 Length=11374105 Score = 91.5 bits (100), Expect = 3e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || |||||||| | || || || ||||||||| |||| Sbjct 483850 AAGACCCTGACGGGGAAGACGATCACGCTCGAGGTAGAGTCTTCTGACACTATCGACAAT 483791 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || | || || || ||||||| || | || |||||| Sbjct 483790 GTGAAGGCCAAGATCCAGGACRAGGAGGGGATCCCGCCGGACCAGCAGCGGCTCATCTTC 483731 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| | || || || || ||| | ||||| ||||| ||||||| ||||| Sbjct 483730 GCCGGGAAGCAGCTCGAGGACGGGAGAACTCTCGCCGACTACAATATCCAGAAGGAGTCG 483671 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 483670 ACGCTCCACCTCGT 483657 >seq16 Length=4450370 Score = 86.0 bits (94), Expect = 1e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || || || || || || ||||| |||| ||||| || ||| Sbjct 3338307 CAGATCTTCGTCAAGACTCTTACCGGCAAGACCATCACGYTGGAGGTGGAGTCCTCGGAC 3338366 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || || || || |||||| || Sbjct 3338367 ACCATCGACAACGTGAAGGCTAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAG 3338426 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| |||| || || | || | ||||| || ||| || Sbjct 3338427 CGTCTGATCTTCGCCGGGAAGCAGCTGGAGGACGGCCGCACCCTCGCCGACTATAACATC 3338486 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || || ||||| || Sbjct 3338487 CAGAAGGAGTCCACGCTCCACCTGGT 3338512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181820497158420