Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq2 120 9e-23 seq8 118 3e-22 seq6 102 2e-17 seq19 86.0 2e-12 seq3 80.6 8e-11 >seq2 Length=11374105 Score = 120 bits (132), Expect = 9e-23 Identities = 130/170 (76%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 19832 TACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGTGTT 19891 |||||||| || ||||||||||| || | || | || ||| | ||||||||| |||| Sbjct 4329607 TACATGGGTCGTGAGTGGGAACTAAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGTT 4329666 Query 19892 GCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACCCGTTTGGTCA 19950 || || || ||||| || ||||| || |||| || ||||| | ||||||| ||||||| Sbjct 4329667 GCATATTCAGCTCCTGTAGCAGCTGCTACTGCTGT-TTTCTTGATCTACCCTATTGGTCA 4329725 Query 19951 GGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACT 20000 || || || || |||| ||||||| | || || || ||||| ||||||| Sbjct 4329726 AGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACT 4329775 >seq8 Length=7641483 Score = 118 bits (130), Expect = 3e-22 Identities = 134/180 (74%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 20303 ATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTCAACTTT 20362 |||||||| ||| || || || ||| ||||| || || || |||| |||| | ||| Sbjct 525067 ATTTGGTTTATTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGATTTCCATTTT 525126 Query 20363 AACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAAT 20422 ||||| ||| | | ||||| ||||||| ||| ||| |||| |||| || |||| Sbjct 525127 AACCAATCCATAGTTGACAATCCGAGTCGTGTTATTAATATTTGGACTGATATCATCAAC 525186 Query 20423 CGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCTCATAACTTCCCACTTGAC 20482 | ||||||||| || | || |||||||||||||| |||||| | |||||||| || ||| Sbjct 525187 CATGCTAATCTTGGTATGGAAGTGATGCATGAACGTAATGCTTACAACTTCCCTCTAGAC 525246 >seq6 Length=8045491 Score = 102 bits (112), Expect = 2e-17 Identities = 120/159 (75%), Gaps = 5/159 (3%) Strand=Plus/Plus Query 19920 CTGCGGTCTTTCTCG-TCTACCCGTTTGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTG 19978 |||| || ||||| | ||||||| ||||||| || || || || |||| | || || | Sbjct 2591563 CTGCTGT-TTTCTTGATCTACCCTATTGGTCAAGGAAGTTTTTCTGATGGTTTGTCTCTA 2591621 Query 19979 GGTATCTCGGGTACGTTCAACTACATGTTGGTATTCCAAGCCGAACATAACATTCTCATG 20038 || || || ||||| ||||||| ||| | |||||| | | ||||| ||| || ||| Sbjct 2591622 GGAATTTCTGGTACATTCAACTTCATAATTGTATTCAAGACAGAACA---CATCCTTATG 2591678 Query 20039 CACCCGTTCCACATGCTTGGTGTGGCTGGTGTATTCGGT 20077 ||||| ||||||||| | || || |||||||||||| || Sbjct 2591679 CACCCATTCCACATGTTAGGCGTAGCTGGTGTATTCTGT 2591717 >seq19 Length=3929835 Score = 86.0 bits (94), Expect = 2e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 20391 GTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATGC 20450 |||| ||| | ||||||||||| ||| |||| |||||||| || || | || || |||| Sbjct 3082452 GTGTTATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGC 3082511 Query 20451 ATGAACGGAATGCTCATAACTTCCCACTTGAC 20482 ||||||| |||||||| |||||| | || ||| Sbjct 3082512 ATGAACGTAATGCTCACAACTTCTCTCTAGAC 3082543 >seq3 Length=8976907 Score = 80.6 bits (88), Expect = 8e-11 Identities = 140/200 (70%), Gaps = 9/200 (5%) Strand=Plus/Plus Query 19761 TTGATGAATGGCTCTACAACGGGGGACCGTTCCAACT---TGTGGTCTTC--CACTTCCT 19815 ||||| | ||| | ||||| || || || | | | || ||| | ||| |||||| | Sbjct 715746 TTGATTAGTGGTTATACAATGGCGGTCCTTACGAGCTAATTGTTCTATTCTACACTTCTT 715805 Query 19816 CATTGGCAT--CTATGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATG 19873 |||| | || |||| |||||| || |||||||||||||| | || || || ||| Sbjct 715806 AMTTGGTGTAGCT-TGCT-ACATGGATCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATG 715863 Query 19874 AGGCCTTGGATTTGTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTC 19933 ||||||||| |||||| || || ||||| || ||||| || |||| || || | Sbjct 715864 CATCCTTGGATTGCTGTTGCATATTCAGCTCCTGTWGCAGCTGCTACTGCTGTTTTATTG 715923 Query 19934 GTCTACCCGTTTGGTCAGGG 19953 |||||| ||||||| || Sbjct 715924 ATCTACCTTATTGGTCAAGG 715943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148828764653160