Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17]
20 sequences; 136,670,443 total letters
Query= NC_025456.1
Length=46547
Score E
Sequences producing significant alignments: (Bits) Value
seq2 120 9e-23
seq8 118 3e-22
seq6 102 2e-17
seq19 86.0 2e-12
seq3 80.6 8e-11
>seq2
Length=11374105
Score = 120 bits (132), Expect = 9e-23
Identities = 130/170 (76%), Gaps = 2/170 (1%)
Strand=Plus/Plus
Query 19832 TACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGTGTT 19891
|||||||| || ||||||||||| || | || | || ||| | ||||||||| ||||
Sbjct 4329607 TACATGGGTCGTGAGTGGGAACTAAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGTT 4329666
Query 19892 GCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACCCGTTTGGTCA 19950
|| || || ||||| || ||||| || |||| || ||||| | ||||||| |||||||
Sbjct 4329667 GCATATTCAGCTCCTGTAGCAGCTGCTACTGCTGT-TTTCTTGATCTACCCTATTGGTCA 4329725
Query 19951 GGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACT 20000
|| || || || |||| ||||||| | || || || ||||| |||||||
Sbjct 4329726 AGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACT 4329775
>seq8
Length=7641483
Score = 118 bits (130), Expect = 3e-22
Identities = 134/180 (74%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 20303 ATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTCAACTTT 20362
|||||||| ||| || || || ||| ||||| || || || |||| |||| | |||
Sbjct 525067 ATTTGGTTTATTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGATTTCCATTTT 525126
Query 20363 AACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAAT 20422
||||| ||| | | ||||| ||||||| ||| ||| |||| |||| || ||||
Sbjct 525127 AACCAATCCATAGTTGACAATCCGAGTCGTGTTATTAATATTTGGACTGATATCATCAAC 525186
Query 20423 CGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCTCATAACTTCCCACTTGAC 20482
| ||||||||| || | || |||||||||||||| |||||| | |||||||| || |||
Sbjct 525187 CATGCTAATCTTGGTATGGAAGTGATGCATGAACGTAATGCTTACAACTTCCCTCTAGAC 525246
>seq6
Length=8045491
Score = 102 bits (112), Expect = 2e-17
Identities = 120/159 (75%), Gaps = 5/159 (3%)
Strand=Plus/Plus
Query 19920 CTGCGGTCTTTCTCG-TCTACCCGTTTGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTG 19978
|||| || ||||| | ||||||| ||||||| || || || || |||| | || || |
Sbjct 2591563 CTGCTGT-TTTCTTGATCTACCCTATTGGTCAAGGAAGTTTTTCTGATGGTTTGTCTCTA 2591621
Query 19979 GGTATCTCGGGTACGTTCAACTACATGTTGGTATTCCAAGCCGAACATAACATTCTCATG 20038
|| || || ||||| ||||||| ||| | |||||| | | ||||| ||| || |||
Sbjct 2591622 GGAATTTCTGGTACATTCAACTTCATAATTGTATTCAAGACAGAACA---CATCCTTATG 2591678
Query 20039 CACCCGTTCCACATGCTTGGTGTGGCTGGTGTATTCGGT 20077
||||| ||||||||| | || || |||||||||||| ||
Sbjct 2591679 CACCCATTCCACATGTTAGGCGTAGCTGGTGTATTCTGT 2591717
>seq19
Length=3929835
Score = 86.0 bits (94), Expect = 2e-12
Identities = 74/92 (80%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 20391 GTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATGC 20450
|||| ||| | ||||||||||| ||| |||| |||||||| || || | || || ||||
Sbjct 3082452 GTGTTATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGC 3082511
Query 20451 ATGAACGGAATGCTCATAACTTCCCACTTGAC 20482
||||||| |||||||| |||||| | || |||
Sbjct 3082512 ATGAACGTAATGCTCACAACTTCTCTCTAGAC 3082543
>seq3
Length=8976907
Score = 80.6 bits (88), Expect = 8e-11
Identities = 140/200 (70%), Gaps = 9/200 (5%)
Strand=Plus/Plus
Query 19761 TTGATGAATGGCTCTACAACGGGGGACCGTTCCAACT---TGTGGTCTTC--CACTTCCT 19815
||||| | ||| | ||||| || || || | | | || ||| | ||| |||||| |
Sbjct 715746 TTGATTAGTGGTTATACAATGGCGGTCCTTACGAGCTAATTGTTCTATTCTACACTTCTT 715805
Query 19816 CATTGGCAT--CTATGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATG 19873
|||| | || |||| |||||| || |||||||||||||| | || || || |||
Sbjct 715806 AMTTGGTGTAGCT-TGCT-ACATGGATCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATG 715863
Query 19874 AGGCCTTGGATTTGTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTC 19933
||||||||| |||||| || || ||||| || ||||| || |||| || || |
Sbjct 715864 CATCCTTGGATTGCTGTTGCATATTCAGCTCCTGTWGCAGCTGCTACTGCTGTTTTATTG 715923
Query 19934 GTCTACCCGTTTGGTCAGGG 19953
|||||| ||||||| ||
Sbjct 715924 ATCTACCTTATTGGTCAAGG 715943
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 148828764653160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |