Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq2 107 6e-19 seq19 96.9 1e-15 seq3 87.8 5e-13 >seq2 Length=11374105 Score = 107 bits (118), Expect = 6e-19 Identities = 125/169 (74%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 28960 TACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTTGTGTC 29019 |||||||| || ||||||||||| || | || | || ||| | || |||||| ||| Sbjct 4329607 TACATGGGTCGTGAGTGGGAACTAAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGTT 4329666 Query 29020 GCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATTCGGTCAA 29079 ||||| |||||||| || ||||| || |||| |||||| | ||||||| | |||||| Sbjct 4329667 GCATATTCAGCTCCTGTAGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCAA 4329726 Query 29080 GGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTCAACT 29128 || |||| || | |||||| | || ||||| || || ||||||| Sbjct 4329727 GGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACT 4329775 >seq19 Length=3929835 Score = 96.9 bits (106), Expect = 1e-15 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 29519 GTGTCATTAATACTTGGGCTGATGTTCTCAATCGCGCTAACCTCGGCTTTGAAGTAATGC 29578 |||| ||||| |||||||||||| || |||| || |||||||| || | ||||| |||| Sbjct 3082452 GTGTTATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGC 3082511 Query 29579 ATGAGCGTAATGCTCATAACTTCCCACTTGATCTGGCTACA 29619 |||| ||||||||||| |||||| | || || | |||||| Sbjct 3082512 ATGAACGTAATGCTCACAACTTCTCTCTAGACTTAGCTACA 3082552 >seq3 Length=8976907 Score = 87.8 bits (96), Expect = 5e-13 Identities = 142/200 (71%), Gaps = 9/200 (5%) Strand=Plus/Plus Query 28889 TTGATGAATGGCTCTACAACGGGGGACCGTTCCAACT---TGTGGTCTTC--CACTTCCT 28943 ||||| | ||| | ||||| || || || | | | || ||| | ||| |||||| | Sbjct 715746 TTGATTAGTGGTTATACAATGGCGGTCCTTACGAGCTAATTGTTCTATTCTACACTTCTT 715805 Query 28944 CATTGGCGT--CTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGAATG 29001 |||| || || |||| |||||| || |||||||||||||| | || || || ||| Sbjct 715806 AMTTGGTGTAGCT-TGCT-ACATGGATCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATG 715863 Query 29002 AGGCCGTGGATTTGTGTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTC 29061 || |||||| ||| ||||| |||||||| || ||||| || |||| ||||| | Sbjct 715864 CATCCTTGGATTGCTGTTGCATATTCAGCTCCTGTWGCAGCTGCTACTGCTGTTTTATTG 715923 Query 29062 GTCTACCCATTCGGTCAAGG 29081 |||||| | |||||||| Sbjct 715924 ATCTACCTTATTGGTCAAGG 715943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146665565166920