Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17]
20 sequences; 136,670,443 total letters
Query= NC_025464.1
Length=44147
Score E
Sequences producing significant alignments: (Bits) Value
seq2 111 4e-20
seq8 102 2e-17
seq19 96.9 1e-15
seq3 93.3 1e-14
>seq2
Length=11374105
Score = 111 bits (122), Expect = 4e-20
Identities = 126/169 (75%), Gaps = 0/169 (0%)
Strand=Plus/Plus
Query 19051 TACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGGATGCGCCCTTGGATTTGTGTT 19110
|||||||| || ||||||||||| || | || | || ||||| ||||||||| ||||
Sbjct 4329607 TACATGGGTCGTGAGTGGGAACTAAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGTT 4329666
Query 19111 GCCTACTCAGCTCCTGTTGCCGCAGCCTCTGCGGTCTTCCTTGTCTATCCATTTGGTCAA 19170
|| || ||||||||||| || || || |||| || ||| | |||| || ||||||||
Sbjct 4329667 GCATATTCAGCTCCTGTAGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCAA 4329726
Query 19171 GGTTCCTTTAGCGACGCTATGCCTTTGGGTATTAGTGGTACGTTCAACT 19219
|| ||| || | ||||||| | || ||| |||||| |||||||
Sbjct 4329727 GGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACT 4329775
>seq8
Length=7641483
Score = 102 bits (112), Expect = 2e-17
Identities = 136/189 (72%), Gaps = 0/189 (0%)
Strand=Plus/Plus
Query 19522 ATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCATTCAACTTGAATGGCTTTAACTTT 19581
||||||||| || | || | || || ||||| |||||| | || | || | |||
Sbjct 525067 ATTTGGTTTATTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGATTTCCATTTT 525126
Query 19582 AACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAAT 19641
||||| ||| | ||||||| ||||||| ||| ||| |||| |||| || ||||
Sbjct 525127 AACCAATCCATAGTTGACAATCCGAGTCGTGTTATTAATATTTGGACTGATATCATCAAC 525186
Query 19642 CGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTAATGCTCATAACTTCCCACTTGAT 19701
| |||||| || || | || || ||||| |||||||||||| | |||||||| || ||
Sbjct 525187 CATGCTAATCTTGGTATGGAAGTGATGCATGAACGTAATGCTTACAACTTCCCTCTAGAC 525246
Query 19702 TTGGCTACA 19710
|| ||| ||
Sbjct 525247 TTAGCTGCA 525255
>seq19
Length=3929835
Score = 96.9 bits (106), Expect = 1e-15
Identities = 82/101 (81%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 19610 GTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGC 19669
|||| ||| | ||||||||||| ||| |||| ||||||||||| || | || || ||||
Sbjct 3082452 GTGTTATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGC 3082511
Query 19670 ACGAACGTAATGCTCATAACTTCCCACTTGATTTGGCTACA 19710
| |||||||||||||| |||||| | || || || ||||||
Sbjct 3082512 ATGAACGTAATGCTCACAACTTCTCTCTAGACTTAGCTACA 3082552
>seq3
Length=8976907
Score = 93.3 bits (102), Expect = 1e-14
Identities = 143/200 (72%), Gaps = 9/200 (5%)
Strand=Plus/Plus
Query 18980 TTGATGAATGGCTCTACAACGGGGGACCGTTCCAACT---TGTGGTCTTC--CACTTCCT 19034
||||| | ||| | ||||| || || || | | | || ||| | ||| |||||| |
Sbjct 715746 TTGATTAGTGGTTATACAATGGCGGTCCTTACGAGCTAATTGTTCTATTCTACACTTCTT 715805
Query 19035 CATTGGCGT--CTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGGATG 19092
|||| || || |||| |||||| || |||||||||||||| | || || || |||
Sbjct 715806 AMTTGGTGTAGCT-TGCT-ACATGGATCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATG 715863
Query 19093 CGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTCTGCGGTCTTCCTT 19152
| ||||||||| |||||| || ||||||||||| || || || |||| || || |
Sbjct 715864 CATCCTTGGATTGCTGTTGCATATTCAGCTCCTGTWGCAGCTGCTACTGCTGTTTTATTG 715923
Query 19153 GTCTATCCATTTGGTCAAGG 19172
|||| | ||||||||||
Sbjct 715924 ATCTACCTTATTGGTCAAGG 715943
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 141148766477160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |