Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq2 111 4e-20 seq8 102 2e-17 seq19 96.9 1e-15 seq3 93.3 1e-14 >seq2 Length=11374105 Score = 111 bits (122), Expect = 4e-20 Identities = 126/169 (75%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 19051 TACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGGATGCGCCCTTGGATTTGTGTT 19110 |||||||| || ||||||||||| || | || | || ||||| ||||||||| |||| Sbjct 4329607 TACATGGGTCGTGAGTGGGAACTAAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGTT 4329666 Query 19111 GCCTACTCAGCTCCTGTTGCCGCAGCCTCTGCGGTCTTCCTTGTCTATCCATTTGGTCAA 19170 || || ||||||||||| || || || |||| || ||| | |||| || |||||||| Sbjct 4329667 GCATATTCAGCTCCTGTAGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCAA 4329726 Query 19171 GGTTCCTTTAGCGACGCTATGCCTTTGGGTATTAGTGGTACGTTCAACT 19219 || ||| || | ||||||| | || ||| |||||| ||||||| Sbjct 4329727 GGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACT 4329775 >seq8 Length=7641483 Score = 102 bits (112), Expect = 2e-17 Identities = 136/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 19522 ATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCATTCAACTTGAATGGCTTTAACTTT 19581 ||||||||| || | || | || || ||||| |||||| | || | || | ||| Sbjct 525067 ATTTGGTTTATTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGATTTCCATTTT 525126 Query 19582 AACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAAT 19641 ||||| ||| | ||||||| ||||||| ||| ||| |||| |||| || |||| Sbjct 525127 AACCAATCCATAGTTGACAATCCGAGTCGTGTTATTAATATTTGGACTGATATCATCAAC 525186 Query 19642 CGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTAATGCTCATAACTTCCCACTTGAT 19701 | |||||| || || | || || ||||| |||||||||||| | |||||||| || || Sbjct 525187 CATGCTAATCTTGGTATGGAAGTGATGCATGAACGTAATGCTTACAACTTCCCTCTAGAC 525246 Query 19702 TTGGCTACA 19710 || ||| || Sbjct 525247 TTAGCTGCA 525255 >seq19 Length=3929835 Score = 96.9 bits (106), Expect = 1e-15 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 19610 GTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGC 19669 |||| ||| | ||||||||||| ||| |||| ||||||||||| || | || || |||| Sbjct 3082452 GTGTTATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGC 3082511 Query 19670 ACGAACGTAATGCTCATAACTTCCCACTTGATTTGGCTACA 19710 | |||||||||||||| |||||| | || || || |||||| Sbjct 3082512 ATGAACGTAATGCTCACAACTTCTCTCTAGACTTAGCTACA 3082552 >seq3 Length=8976907 Score = 93.3 bits (102), Expect = 1e-14 Identities = 143/200 (72%), Gaps = 9/200 (5%) Strand=Plus/Plus Query 18980 TTGATGAATGGCTCTACAACGGGGGACCGTTCCAACT---TGTGGTCTTC--CACTTCCT 19034 ||||| | ||| | ||||| || || || | | | || ||| | ||| |||||| | Sbjct 715746 TTGATTAGTGGTTATACAATGGCGGTCCTTACGAGCTAATTGTTCTATTCTACACTTCTT 715805 Query 19035 CATTGGCGT--CTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGGATG 19092 |||| || || |||| |||||| || |||||||||||||| | || || || ||| Sbjct 715806 AMTTGGTGTAGCT-TGCT-ACATGGATCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATG 715863 Query 19093 CGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTCTGCGGTCTTCCTT 19152 | ||||||||| |||||| || ||||||||||| || || || |||| || || | Sbjct 715864 CATCCTTGGATTGCTGTTGCATATTCAGCTCCTGTWGCAGCTGCTACTGCTGTTTTATTG 715923 Query 19153 GTCTATCCATTTGGTCAAGG 19172 |||| | |||||||||| Sbjct 715924 ATCTACCTTATTGGTCAAGG 715943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141148766477160