Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17]
20 sequences; 136,670,443 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq7 394 1e-103
seq5 127 3e-23
seq2 122 1e-21
>seq7
Length=7914316
Score = 394 bits (436), Expect = 1e-103
Identities = 454/602 (75%), Gaps = 20/602 (3%)
Strand=Plus/Minus
Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775
||||| |||||| | ||||| |||| || | ||||||| ||| | |||| || |
Sbjct 1959533 GAGCCCCTGCTGGCGGCGAACCCCGACCGGTTCTGCATGTTCCCGATCAGGTACCCGCAG 1959474
Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT 1455835
|| ||||| |||||| || ||||| ||||| ||||| ||||| || |||||||| |||||
Sbjct 1959473 ATCTGGGAGATGTAC-AAGAAGGCGGAGGCGTCCTTCTGGACGGCGGAGGAGGTGGACCT 1959415
Query 1455836 CGGCGCCGACA--CGGTCCACTGGGTGTCG---CTGAGCGACGACGAGCGCCATTTCATC 1455890
| | |||| ||| ||||||| | | || | || |||||||||||| ||||||
Sbjct 1959414 CTCCCACGACCTCCGG--CACTGGGAGCAGGACCTCACCGCCGACGAGCGCCACTTCATC 1959357
Query 1455891 AAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGG 1455950
| |||||||||||||| || ||| ||| ||| ||||||||| |||||||||||| ||
Sbjct 1959356 ACCCACGTCCTCGCCTTCTT-CGCGGCCTCCGACGGCATCGTGCTCGAGAACCTGGCSGG 1959298
Query 1455951 CCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGC 1456010
|||||| ||||| |||||||| | | ||||| || || ||||| |||||||||||
Sbjct 1959297 CCGCTTCATGAAGGAGGTCCAGGTCGCCGAGGCCCGCGCCTTCTACGGCTTCCAGATCGC 1959238
Query 1456011 CATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCC 1456070
|||||| ||||||||||| || | ||| ||||| | || |||||| |||||||| |
Sbjct 1959237 CATCGAGAACATCCACTCCGAGATGTACAGCCTCCTCCTGGAGACCTACATCAAGGACTC 1959178
Query 1456071 GGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGC 1456130
| | |||| || |||||| |||||| | ||||| || || | ||| |||||
Sbjct 1959177 CGAGGCCAAGGCCCGCCTCTTCCGCGCCGTGGACACCGTCCCCTGCGTGGCCCGCAAGGC 1959118
Query 1456131 CGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCT-CGA-CACTTTGCCGAGCGGCTCG 1456188
||||||||| | |||||| || ||| ||| ||| |||||||| ||||
Sbjct 1959117 CGACTGGGCCCTCCGCTGGATCGAC-------TCCTCCGAGTCCTTCGCCGAGCGCCTCG 1959065
Query 1456189 TCGGCTTTGCC-GCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGC 1456247
||| ||| ||| |||||||||||||||| ||||| ||||| |||||||||||||| ||||
Sbjct 1959064 TCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCCGGCAGCTTCTGCGCCATCTTCTGGC 1959005
Query 1456248 TCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGAC 1456307
||||||||||||||||||||||||| | || ||| |||||| | ||| ||||||
Sbjct 1959004 TCAAGAAGCGCGGCCTCATGCCCGG-CCTCACCTTCTCCAACGAGCTCATCTCCCGCGAC 1958946
Query 1456308 GA 1456309
||
Sbjct 1958945 GA 1958944
Score = 158 bits (174), Expect = 2e-32
Identities = 235/326 (72%), Gaps = 12/326 (4%)
Strand=Plus/Minus
Query 1456454 CACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGC----CGTCGACCGA 1456509
||||| ||||| ||||| || |||||| | | ||| | ||||| || ||||||
Sbjct 1958936 CACTGCGACTTCGCCTGCCTCCTCTACTCCCTCCTCCGCTCCAAGCTCCCCGACGACCGC 1958877
Query 1456510 CGTGCCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTC 1456569
| || || ||| ||| ||| ||||||||||||||| || || ||| |||| |
Sbjct 1958876 CT---CCGCGCC-ATCGTCGCCGACGCCGTCGAGATCGAGCGGGACTTCGTCTGCGACGC 1958821
Query 1456570 GCTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTT 1456629
|| || |||||| |||||||||| || |||||| ||||||||| || ||
Sbjct 1958820 CCTCCCCTGCGCGCTCGTCGGCATGAATCAGGCC-CTCATGGCCCAGTACATCGAGTTC- 1958763
Query 1456630 GTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCC 1456689
|||||||||||||| ||| || |||||| | ||| ||||| | ||||||||
Sbjct 1958762 GTCGCCGACCGCCTCCTCCTCGCCCTCGGCCACCCC-AAGATCTACCACGCCGCCAACCC 1958704
Query 1456690 GTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT 1456749
||| ||||||||| | ||||| ||| |||||||||||||||| |||||| |||||
Sbjct 1958703 CTTCGACTGGATGGAGCTCATCTCCCTCCAGGGCAAGACCAACTTCTTCGAGAAGCGCGT 1958644
Query 1456750 -GGCGAGTACGCCAAGGCCGGCGTCA 1456774
||||||||| |||||| |||||
Sbjct 1958643 CGGCGAGTACCAGAAGGCCTCCGTCA 1958618
Score = 127 bits (140), Expect = 3e-23
Identities = 170/232 (73%), Gaps = 6/232 (3%)
Strand=Plus/Plus
Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970
|||| |||||| ||||||||||| |||||| || | | || |||| |||| |||| ||
Sbjct 7410816 ATCTTCAAGGTCCTCAAGCAGGTCCACCCC-GA--CATCGG--CATC-TCCAGCAAGGCC 7410869
Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030
||| |||||||||| || |||||||||| |||| ||| | ||||||
Sbjct 7410870 ATGGGGATCATGAACAGCTTCATCAACGACATCTTCGAGAAGCTCGCCCAGGAGGCCTCC 7410929
Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090
|| || || |||| ||||||| || ||| | | || ||||||||||| ||||
Sbjct 7410930 CGTCTCGCTCGCTACAACAAGAAGCCGACCATCACCTCCCGGGAGATCCAGACGTCCGTC 7410989
Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
||||| || | | |||||| || |||| |||||| ||||||||||||||||
Sbjct 7410990 CGCCTCGTCCTCCCCGGCGAGCTCGCCAAGCACGCTGTCTCCGAGGGCACCA 7411041
Score = 114 bits (126), Expect = 2e-19
Identities = 166/230 (72%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970
|||| |||||| ||||||||||| |||||| || | | || |||| |||| |||| ||
Sbjct 7369013 ATCTTCAAGGTCCTCAAGCAGGTCCACCCC-GA--CATCGG--CATC-TCCAGCAAGGCC 7368960
Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030
||| |||||||||| || |||||||||| |||| ||| | ||||||
Sbjct 7368959 ATGGGGATCATGAACAGCTTCATCAACGACATCTTCGAGAAGCTCGCCCAGGAGGCCTCC 7368900
Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090
|||||||| || | ||||||| ||| || | | || ||||||||||| ||||
Sbjct 7368899 CGCCTGGCACGGTACAACAAGAAGCCCACCATTACCTCCCGGGAGATCCAGACGTCCGTC 7368840
Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140
| || | | | |||||| || || | |||||||||||||||||||||
Sbjct 7368839 AGGCTCGTACTCCCCGGCGAGCTTGCGAAGCACGCCGTCTCCGAGGGCAC 7368790
>seq5
Length=8147712
Score = 127 bits (140), Expect = 3e-23
Identities = 170/232 (73%), Gaps = 6/232 (3%)
Strand=Plus/Plus
Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970
|||| ||||||||| |||||||| |||||| || | | || |||| |||| |||| ||
Sbjct 7683805 ATCTTCAAGGTGCTGAAGCAGGTCCACCCC-GA--CATCGG--CATC-TCCAGCAAGGCC 7683858
Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030
||| |||||||||| || | |||||||| |||| ||| ||||||
Sbjct 7683859 ATGGGGATCATGAACAGCTTCATTAACGACATCTTCGAGAAGCTCGCTCAGGAGGCCTCC 7683918
Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090
||||| || || | ||||||| ||| ||| | | || |||||||||||| ||||
Sbjct 7683919 CGCCTCGCCCGGTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCCGTT 7683978
Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
||||| || | | ||| || || |||| |||||||||||||||||||||||
Sbjct 7683979 CGCCTCGTCCTCCCCGGGGAGCTCGCCAAGCACGCCGTCTCCGAGGGCACCA 7684030
>seq2
Length=11374105
Score = 122 bits (134), Expect = 1e-21
Identities = 169/232 (73%), Gaps = 6/232 (3%)
Strand=Plus/Plus
Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970
|||| ||||||| | |||||||| |||||| || | |||| |||| |||| |||| ||
Sbjct 10039885 ATCTTCAAGGTGTTGAAGCAGGTCCACCCC-GA--CATTGG--CATC-TCCAGCAAGGCC 10039938
Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030
||| ||||||||| || |||||||||| |||| ||| ||||||| |
Sbjct 10039939 ATGGGAATCATGAACAGCTTCATCAACGACATCTTCGAGAAGCTCGCTCACGAGGCCTCT 10039998
Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090
||||| ||||| | ||||||| ||| || | | || ||||| |||||| ||||
Sbjct 10039999 CGCCTTGCGCGATACAACAAGAAGCCCACCATTACCTCCCGGGAGATTCAGACCTCCGTC 10040058
Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
||||| | | | |||||| ||||| | ||| || ||||||||||||||||
Sbjct 10040059 CGCCTCGTGCTCCCCGGCGAGCTGGCGAAGCATGCAGTCTCCGAGGGCACCA 10040110
Score = 118 bits (130), Expect = 2e-20
Identities = 168/232 (72%), Gaps = 6/232 (3%)
Strand=Plus/Plus
Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970
|||| ||||||||| |||||||| |||||| || | | || |||| |||| |||| ||
Sbjct 10095166 ATCTTCAAGGTGCTGAAGCAGGTCCACCCC-GA--CATCGG--CATC-TCCAGCAAGGCC 10095219
Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030
||| ||||||||| || |||||||||| |||| ||| |||||
Sbjct 10095220 ATGGGCATCATGAACAGCTTCATCAACGACATCTTCGAGAAGCTCGCTCAGGAGGCGTCC 10095279
Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090
|| || || |||| ||||||| ||| ||| | | || |||||||||||| ||||
Sbjct 10095280 CGTCTCGCCCGCTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCCGTC 10095339
Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
||||| || | | ||| || || |||| ||| |||||||||||||||||||
Sbjct 10095340 CGCCTCGTCCTCCCCGGTGAGCTCGCCAAGCATGCCGTCTCCGAGGGCACCA 10095391
Score = 113 bits (124), Expect = 6e-19
Identities = 167/232 (72%), Gaps = 6/232 (3%)
Strand=Plus/Plus
Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970
|||| |||||| | |||||||| |||||| || | | || |||| |||| |||| ||
Sbjct 10024232 ATCTTTAAGGTGTTGAAGCAGGTCCACCCC-GA--CATCGG--CATC-TCCAGCAAGGCC 10024285
Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030
||| ||||||||| || |||||||||| |||| ||| ||||||| |
Sbjct 10024286 ATGGGAATCATGAACAGCTTCATCAACGACATCTTCGAGAAGCTCGCTCACGAGGCCTCT 10024345
Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090
||||| ||||| | ||||||| ||| || | | || ||||| |||||| ||||
Sbjct 10024346 CGCCTTGCGCGATACAACAAGAAGCCCACCATTACCTCCCGGGAGATTCAGACCTCCGTC 10024405
Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
||||| | | | ||| |||||||| | ||| || ||||||||||||||||
Sbjct 10024406 CGCCTCGTGCTCCCCGGAGAACTGGCGAAGCATGCAGTCTCCGAGGGCACCA 10024457
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177809270963240
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