Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq7 394 1e-103 seq5 127 3e-23 seq2 122 1e-21 >seq7 Length=7914316 Score = 394 bits (436), Expect = 1e-103 Identities = 454/602 (75%), Gaps = 20/602 (3%) Strand=Plus/Minus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 ||||| |||||| | ||||| |||| || | ||||||| ||| | |||| || | Sbjct 1959533 GAGCCCCTGCTGGCGGCGAACCCCGACCGGTTCTGCATGTTCCCGATCAGGTACCCGCAG 1959474 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT 1455835 || ||||| |||||| || ||||| ||||| ||||| ||||| || |||||||| ||||| Sbjct 1959473 ATCTGGGAGATGTAC-AAGAAGGCGGAGGCGTCCTTCTGGACGGCGGAGGAGGTGGACCT 1959415 Query 1455836 CGGCGCCGACA--CGGTCCACTGGGTGTCG---CTGAGCGACGACGAGCGCCATTTCATC 1455890 | | |||| ||| ||||||| | | || | || |||||||||||| |||||| Sbjct 1959414 CTCCCACGACCTCCGG--CACTGGGAGCAGGACCTCACCGCCGACGAGCGCCACTTCATC 1959357 Query 1455891 AAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGG 1455950 | |||||||||||||| || ||| ||| ||| ||||||||| |||||||||||| || Sbjct 1959356 ACCCACGTCCTCGCCTTCTT-CGCGGCCTCCGACGGCATCGTGCTCGAGAACCTGGCSGG 1959298 Query 1455951 CCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGC 1456010 |||||| ||||| |||||||| | | ||||| || || ||||| ||||||||||| Sbjct 1959297 CCGCTTCATGAAGGAGGTCCAGGTCGCCGAGGCCCGCGCCTTCTACGGCTTCCAGATCGC 1959238 Query 1456011 CATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCC 1456070 |||||| ||||||||||| || | ||| ||||| | || |||||| |||||||| | Sbjct 1959237 CATCGAGAACATCCACTCCGAGATGTACAGCCTCCTCCTGGAGACCTACATCAAGGACTC 1959178 Query 1456071 GGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGC 1456130 | | |||| || |||||| |||||| | ||||| || || | ||| ||||| Sbjct 1959177 CGAGGCCAAGGCCCGCCTCTTCCGCGCCGTGGACACCGTCCCCTGCGTGGCCCGCAAGGC 1959118 Query 1456131 CGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCT-CGA-CACTTTGCCGAGCGGCTCG 1456188 ||||||||| | |||||| || ||| ||| ||| |||||||| |||| Sbjct 1959117 CGACTGGGCCCTCCGCTGGATCGAC-------TCCTCCGAGTCCTTCGCCGAGCGCCTCG 1959065 Query 1456189 TCGGCTTTGCC-GCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGC 1456247 ||| ||| ||| |||||||||||||||| ||||| ||||| |||||||||||||| |||| Sbjct 1959064 TCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCCGGCAGCTTCTGCGCCATCTTCTGGC 1959005 Query 1456248 TCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGAC 1456307 ||||||||||||||||||||||||| | || ||| |||||| | ||| |||||| Sbjct 1959004 TCAAGAAGCGCGGCCTCATGCCCGG-CCTCACCTTCTCCAACGAGCTCATCTCCCGCGAC 1958946 Query 1456308 GA 1456309 || Sbjct 1958945 GA 1958944 Score = 158 bits (174), Expect = 2e-32 Identities = 235/326 (72%), Gaps = 12/326 (4%) Strand=Plus/Minus Query 1456454 CACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGC----CGTCGACCGA 1456509 ||||| ||||| ||||| || |||||| | | ||| | ||||| || |||||| Sbjct 1958936 CACTGCGACTTCGCCTGCCTCCTCTACTCCCTCCTCCGCTCCAAGCTCCCCGACGACCGC 1958877 Query 1456510 CGTGCCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTC 1456569 | || || ||| ||| ||| ||||||||||||||| || || ||| |||| | Sbjct 1958876 CT---CCGCGCC-ATCGTCGCCGACGCCGTCGAGATCGAGCGGGACTTCGTCTGCGACGC 1958821 Query 1456570 GCTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTT 1456629 || || |||||| |||||||||| || |||||| ||||||||| || || Sbjct 1958820 CCTCCCCTGCGCGCTCGTCGGCATGAATCAGGCC-CTCATGGCCCAGTACATCGAGTTC- 1958763 Query 1456630 GTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCC 1456689 |||||||||||||| ||| || |||||| | ||| ||||| | |||||||| Sbjct 1958762 GTCGCCGACCGCCTCCTCCTCGCCCTCGGCCACCCC-AAGATCTACCACGCCGCCAACCC 1958704 Query 1456690 GTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT 1456749 ||| ||||||||| | ||||| ||| |||||||||||||||| |||||| ||||| Sbjct 1958703 CTTCGACTGGATGGAGCTCATCTCCCTCCAGGGCAAGACCAACTTCTTCGAGAAGCGCGT 1958644 Query 1456750 -GGCGAGTACGCCAAGGCCGGCGTCA 1456774 ||||||||| |||||| ||||| Sbjct 1958643 CGGCGAGTACCAGAAGGCCTCCGTCA 1958618 Score = 127 bits (140), Expect = 3e-23 Identities = 170/232 (73%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| |||||| ||||||||||| |||||| || | | || |||| |||| |||| || Sbjct 7410816 ATCTTCAAGGTCCTCAAGCAGGTCCACCCC-GA--CATCGG--CATC-TCCAGCAAGGCC 7410869 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| |||||||||| || |||||||||| |||| ||| | |||||| Sbjct 7410870 ATGGGGATCATGAACAGCTTCATCAACGACATCTTCGAGAAGCTCGCCCAGGAGGCCTCC 7410929 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || || |||| ||||||| || ||| | | || ||||||||||| |||| Sbjct 7410930 CGTCTCGCTCGCTACAACAAGAAGCCGACCATCACCTCCCGGGAGATCCAGACGTCCGTC 7410989 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| || | | |||||| || |||| |||||| |||||||||||||||| Sbjct 7410990 CGCCTCGTCCTCCCCGGCGAGCTCGCCAAGCACGCTGTCTCCGAGGGCACCA 7411041 Score = 114 bits (126), Expect = 2e-19 Identities = 166/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| |||||| ||||||||||| |||||| || | | || |||| |||| |||| || Sbjct 7369013 ATCTTCAAGGTCCTCAAGCAGGTCCACCCC-GA--CATCGG--CATC-TCCAGCAAGGCC 7368960 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| |||||||||| || |||||||||| |||| ||| | |||||| Sbjct 7368959 ATGGGGATCATGAACAGCTTCATCAACGACATCTTCGAGAAGCTCGCCCAGGAGGCCTCC 7368900 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 |||||||| || | ||||||| ||| || | | || ||||||||||| |||| Sbjct 7368899 CGCCTGGCACGGTACAACAAGAAGCCCACCATTACCTCCCGGGAGATCCAGACGTCCGTC 7368840 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 | || | | | |||||| || || | ||||||||||||||||||||| Sbjct 7368839 AGGCTCGTACTCCCCGGCGAGCTTGCGAAGCACGCCGTCTCCGAGGGCAC 7368790 >seq5 Length=8147712 Score = 127 bits (140), Expect = 3e-23 Identities = 170/232 (73%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| ||||||||| |||||||| |||||| || | | || |||| |||| |||| || Sbjct 7683805 ATCTTCAAGGTGCTGAAGCAGGTCCACCCC-GA--CATCGG--CATC-TCCAGCAAGGCC 7683858 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| |||||||||| || | |||||||| |||| ||| |||||| Sbjct 7683859 ATGGGGATCATGAACAGCTTCATTAACGACATCTTCGAGAAGCTCGCTCAGGAGGCCTCC 7683918 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 ||||| || || | ||||||| ||| ||| | | || |||||||||||| |||| Sbjct 7683919 CGCCTCGCCCGGTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCCGTT 7683978 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| || | | ||| || || |||| ||||||||||||||||||||||| Sbjct 7683979 CGCCTCGTCCTCCCCGGGGAGCTCGCCAAGCACGCCGTCTCCGAGGGCACCA 7684030 >seq2 Length=11374105 Score = 122 bits (134), Expect = 1e-21 Identities = 169/232 (73%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| ||||||| | |||||||| |||||| || | |||| |||| |||| |||| || Sbjct 10039885 ATCTTCAAGGTGTTGAAGCAGGTCCACCCC-GA--CATTGG--CATC-TCCAGCAAGGCC 10039938 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||| || |||||||||| |||| ||| ||||||| | Sbjct 10039939 ATGGGAATCATGAACAGCTTCATCAACGACATCTTCGAGAAGCTCGCTCACGAGGCCTCT 10039998 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 ||||| ||||| | ||||||| ||| || | | || ||||| |||||| |||| Sbjct 10039999 CGCCTTGCGCGATACAACAAGAAGCCCACCATTACCTCCCGGGAGATTCAGACCTCCGTC 10040058 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| | | | |||||| ||||| | ||| || |||||||||||||||| Sbjct 10040059 CGCCTCGTGCTCCCCGGCGAGCTGGCGAAGCATGCAGTCTCCGAGGGCACCA 10040110 Score = 118 bits (130), Expect = 2e-20 Identities = 168/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| ||||||||| |||||||| |||||| || | | || |||| |||| |||| || Sbjct 10095166 ATCTTCAAGGTGCTGAAGCAGGTCCACCCC-GA--CATCGG--CATC-TCCAGCAAGGCC 10095219 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||| || |||||||||| |||| ||| ||||| Sbjct 10095220 ATGGGCATCATGAACAGCTTCATCAACGACATCTTCGAGAAGCTCGCTCAGGAGGCGTCC 10095279 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || || |||| ||||||| ||| ||| | | || |||||||||||| |||| Sbjct 10095280 CGTCTCGCCCGCTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCCGTC 10095339 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| || | | ||| || || |||| ||| ||||||||||||||||||| Sbjct 10095340 CGCCTCGTCCTCCCCGGTGAGCTCGCCAAGCATGCCGTCTCCGAGGGCACCA 10095391 Score = 113 bits (124), Expect = 6e-19 Identities = 167/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| |||||| | |||||||| |||||| || | | || |||| |||| |||| || Sbjct 10024232 ATCTTTAAGGTGTTGAAGCAGGTCCACCCC-GA--CATCGG--CATC-TCCAGCAAGGCC 10024285 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||| || |||||||||| |||| ||| ||||||| | Sbjct 10024286 ATGGGAATCATGAACAGCTTCATCAACGACATCTTCGAGAAGCTCGCTCACGAGGCCTCT 10024345 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 ||||| ||||| | ||||||| ||| || | | || ||||| |||||| |||| Sbjct 10024346 CGCCTTGCGCGATACAACAAGAAGCCCACCATTACCTCCCGGGAGATTCAGACCTCCGTC 10024405 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| | | | ||| |||||||| | ||| || |||||||||||||||| Sbjct 10024406 CGCCTCGTGCTCCCCGGAGAACTGGCGAAGCATGCAGTCTCCGAGGGCACCA 10024457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177809270963240