Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17]
20 sequences; 136,670,443 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq16 125 6e-24
seq8 123 2e-23
seq7 118 1e-21
seq2 118 1e-21
seq18 96.9 3e-15
seq3 93.3 4e-14
>seq16
Length=4450370
Score = 125 bits (138), Expect = 6e-24
Identities = 145/193 (75%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || ||||| || ||||| | ||| || |||| ||||||||||| || || ||
Sbjct 3338495 CTCCTTCTGGATGTTATAGTCGGCGAGGGTGCGGCCGTCCTCCAGCTGCTTCCCGGCGAA 3338436
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|||| ||||||||||||| || | || |||||||||| |||||| ||||| ||
Sbjct 3338435 GATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTAGCCTTCA-CGT 3338377
Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723
|| | | ||||| || |||||||||| |||||| || || || || | ||| || |
Sbjct 3338376 TGTCGATGGTGTCCGAGGACTCCACCTCCARCGTGATGGTCTTGCCGGTAAGAGTCTTGA 3338317
Query 35724 CAAATATCTGCAT 35736
| || ||||||||
Sbjct 3338316 CGAAGATCTGCAT 3338304
>seq8
Length=7641483
Score = 123 bits (136), Expect = 2e-23
Identities = 146/196 (74%), Gaps = 2/196 (1%)
Strand=Plus/Plus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || |||||||| || || | |||||| |||| || |||||||| || || ||
Sbjct 6351928 CTCCTTCTGGATGTTGTAGTCCGCTAGGGTTCGGCCGTCCTCGAGCTGCTTCCCGGCGAA 6351987
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|||| |||||||||||||| || | | ||||||||| |||||| ||| | ||
Sbjct 6351988 GATCAGCCGCTGCTGGTCCGGTGGTATCCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGT 6352046
Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723
|| | | ||||| || |||||||| | |||||||| || ||||| | || ||||
Sbjct 6352047 TGTCGATGGTGTCRGAAGACTCCACCTCGAGGGTGATCGTCTTCCCCGTGAGGGTCTTCA 6352106
Query 35724 CAAATATCTGCATTCT 35739
| ||||||||||| ||
Sbjct 6352107 CGAATATCTGCATCCT 6352122
>seq7
Length=7914316
Score = 118 bits (130), Expect = 1e-21
Identities = 141/192 (73%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || || ||||| ||||| | |||| | |||| || |||||||| || || ||
Sbjct 4181294 CTCCTTCTGGATATTGTAGTCGGCGAGAGTTCTCCCGTCCTCGAGCTGCTTCCCGGCGAA 4181235
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|| | |||||||||||||| || | | ||||| |||| |||||| ||||| | |
Sbjct 4181234 GATGAGCCGCTGCTGGTCCGGCGGGATCCCCTCCTYGTCCTGGATCTTGGCCTTCACATT 4181175
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| | ||||| || || ||||| | ||||||||| || ||||||| || |||||
Sbjct 4181174 GTCGATAGTGTCAGAAGACTCTACCTCGAGCGTGATCGTCTTCCCCGTCAGGGTCTTCAC 4181115
Query 35725 AAATATCTGCAT 35736
|| ||||||||
Sbjct 4181114 GAAGATCTGCAT 4181103
>seq2
Length=11374105
Score = 118 bits (130), Expect = 1e-21
Identities = 141/192 (73%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || || ||||| ||||| | |||| | |||| || |||||||| || || ||
Sbjct 483674 CTCCTTCTGGATATTGTAGTCGGCGAGAGTTCTCCCGTCCTCGAGCTGCTTCCCGGCGAA 483733
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|| | |||||||||||||| || | | ||||| |||| |||||| ||||| | |
Sbjct 483734 GATGAGCCGCTGCTGGTCCGGCGGGATCCCCTCCTYGTCCTGGATCTTGGCCTTCACATT 483793
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| | ||||| || || ||||| | ||||||||| || ||||||| || |||||
Sbjct 483794 GTCGATAGTGTCAGAAGACTCTACCTCGAGCGTGATCGTCTTCCCCGTCAGGGTCTTCAC 483853
Query 35725 AAATATCTGCAT 35736
|| ||||||||
Sbjct 483854 GAAGATCTGCAT 483865
>seq18
Length=4131207
Score = 96.9 bits (106), Expect = 3e-15
Identities = 100/130 (77%), Gaps = 1/130 (1%)
Strand=Plus/Plus
Query 35521 CCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTC 35580
|||||| |||| || | || |||||| || |||||||| || || | || || |
Sbjct 771100 CCTCAAGACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCTGCAAGAGTGCGGCC 771159
Query 35581 GTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTT 35640
||| ||||||||||| || ||||||||||| | ||||||||| | ||| | || ||||||
Sbjct 771160 GTCCTCCAGCTGCTTCCCAGCAAATATCAATCTCTGCTGGTCTGGAGGGATGCCCTCCTT 771219
Query 35641 GTCCATGATC 35650
|||| |||||
Sbjct 771220 GTCC-TGATC 771228
>seq3
Length=8976907
Score = 93.3 bits (102), Expect = 4e-14
Identities = 117/158 (74%), Gaps = 2/158 (1%)
Strand=Plus/Plus
Query 35580 CGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCT 35639
|||| ||||||||||| || || || |||| || ||||||||||| || | || |||||
Sbjct 8500471 CGTCCTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGGGGGATGCCCTCCT 8500530
Query 35640 TGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTG 35698
||||| |||||| ||| | |||| | | || ||| || |||||||| | |||
Sbjct 8500531 TGTCCTGGATCTTCGCCTTGA-CGTTGTCGATGGTATCGGAGGACTCCACCTCAAGGGTG 8500589
Query 35699 ATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|| || || || || | ||| ||||| || ||||||||
Sbjct 8500590 ATAGTCTTCCCGGTGAGAGTCTTCACGAAGATCTGCAT 8500627
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450793487301600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |