Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq16 125 6e-24 seq8 123 2e-23 seq7 118 1e-21 seq2 118 1e-21 seq18 96.9 3e-15 seq3 93.3 4e-14 >seq16 Length=4450370 Score = 125 bits (138), Expect = 6e-24 Identities = 145/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || ||||| || ||||| | ||| || |||| ||||||||||| || || || Sbjct 3338495 CTCCTTCTGGATGTTATAGTCGGCGAGGGTGCGGCCGTCCTCCAGCTGCTTCCCGGCGAA 3338436 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||||| || | || |||||||||| |||||| ||||| || Sbjct 3338435 GATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTAGCCTTCA-CGT 3338377 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | ||||| || |||||||||| |||||| || || || || | ||| || | Sbjct 3338376 TGTCGATGGTGTCCGAGGACTCCACCTCCARCGTGATGGTCTTGCCGGTAAGAGTCTTGA 3338317 Query 35724 CAAATATCTGCAT 35736 | || |||||||| Sbjct 3338316 CGAAGATCTGCAT 3338304 >seq8 Length=7641483 Score = 123 bits (136), Expect = 2e-23 Identities = 146/196 (74%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || || | |||||| |||| || |||||||| || || || Sbjct 6351928 CTCCTTCTGGATGTTGTAGTCCGCTAGGGTTCGGCCGTCCTCGAGCTGCTTCCCGGCGAA 6351987 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| |||||||||||||| || | | ||||||||| |||||| ||| | || Sbjct 6351988 GATCAGCCGCTGCTGGTCCGGTGGTATCCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGT 6352046 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | ||||| || |||||||| | |||||||| || ||||| | || |||| Sbjct 6352047 TGTCGATGGTGTCRGAAGACTCCACCTCGAGGGTGATCGTCTTCCCCGTGAGGGTCTTCA 6352106 Query 35724 CAAATATCTGCATTCT 35739 | ||||||||||| || Sbjct 6352107 CGAATATCTGCATCCT 6352122 >seq7 Length=7914316 Score = 118 bits (130), Expect = 1e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || || ||||| ||||| | |||| | |||| || |||||||| || || || Sbjct 4181294 CTCCTTCTGGATATTGTAGTCGGCGAGAGTTCTCCCGTCCTCGAGCTGCTTCCCGGCGAA 4181235 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | |||||||||||||| || | | ||||| |||| |||||| ||||| | | Sbjct 4181234 GATGAGCCGCTGCTGGTCCGGCGGGATCCCCTCCTYGTCCTGGATCTTGGCCTTCACATT 4181175 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || || ||||| | ||||||||| || ||||||| || ||||| Sbjct 4181174 GTCGATAGTGTCAGAAGACTCTACCTCGAGCGTGATCGTCTTCCCCGTCAGGGTCTTCAC 4181115 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 4181114 GAAGATCTGCAT 4181103 >seq2 Length=11374105 Score = 118 bits (130), Expect = 1e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || || ||||| ||||| | |||| | |||| || |||||||| || || || Sbjct 483674 CTCCTTCTGGATATTGTAGTCGGCGAGAGTTCTCCCGTCCTCGAGCTGCTTCCCGGCGAA 483733 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | |||||||||||||| || | | ||||| |||| |||||| ||||| | | Sbjct 483734 GATGAGCCGCTGCTGGTCCGGCGGGATCCCCTCCTYGTCCTGGATCTTGGCCTTCACATT 483793 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || || ||||| | ||||||||| || ||||||| || ||||| Sbjct 483794 GTCGATAGTGTCAGAAGACTCTACCTCGAGCGTGATCGTCTTCCCCGTCAGGGTCTTCAC 483853 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 483854 GAAGATCTGCAT 483865 >seq18 Length=4131207 Score = 96.9 bits (106), Expect = 3e-15 Identities = 100/130 (77%), Gaps = 1/130 (1%) Strand=Plus/Plus Query 35521 CCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTC 35580 |||||| |||| || | || |||||| || |||||||| || || | || || | Sbjct 771100 CCTCAAGACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCTGCAAGAGTGCGGCC 771159 Query 35581 GTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTT 35640 ||| ||||||||||| || ||||||||||| | ||||||||| | ||| | || |||||| Sbjct 771160 GTCCTCCAGCTGCTTCCCAGCAAATATCAATCTCTGCTGGTCTGGAGGGATGCCCTCCTT 771219 Query 35641 GTCCATGATC 35650 |||| ||||| Sbjct 771220 GTCC-TGATC 771228 >seq3 Length=8976907 Score = 93.3 bits (102), Expect = 4e-14 Identities = 117/158 (74%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 35580 CGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCT 35639 |||| ||||||||||| || || || |||| || ||||||||||| || | || ||||| Sbjct 8500471 CGTCCTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGGGGGATGCCCTCCT 8500530 Query 35640 TGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTG 35698 ||||| |||||| ||| | |||| | | || ||| || |||||||| | ||| Sbjct 8500531 TGTCCTGGATCTTCGCCTTGA-CGTTGTCGATGGTATCGGAGGACTCCACCTCAAGGGTG 8500589 Query 35699 ATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || || || || | ||| ||||| || |||||||| Sbjct 8500590 ATAGTCTTCCCGGTGAGAGTCTTCACGAAGATCTGCAT 8500627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450793487301600