Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_026923.1 Length=179110 Score E Sequences producing significant alignments: (Bits) Value seq2 136 5e-27 seq6 111 2e-19 seq8 107 2e-18 seq3 89.7 6e-13 >seq2 Length=11374105 Score = 136 bits (150), Expect = 5e-27 Identities = 132/170 (78%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 158002 CTATATGGGACGTGAGTGGGAACTCTCTTACCGTTTAGGTATGCGCCCATGGATCTGTGT 158061 ||| ||||| |||||||||||||| || |||||| |||||||| || ||||| ||| Sbjct 4329606 CTACATGGGTCGTGAGTGGGAACTAAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGT 4329665 Query 158062 AGCATATTCTGCTCCAGTCGCTGCAGCGAGTGCAGTATTCCTAGTCTATCCTTTCGGTCA 158121 |||||||| ||||| || || || || | ||| || ||| | |||| ||| | ||||| Sbjct 4329666 TGCATATTCAGCTCCTGTAGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCA 4329725 Query 158122 AGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACT 158171 ||| ||| || |||| ||||||||| || || ||||||||||| |||| Sbjct 4329726 AGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACT 4329775 >seq6 Length=8045491 Score = 111 bits (122), Expect = 2e-19 Identities = 119/157 (76%), Gaps = 3/157 (2%) Strand=Plus/Plus Query 158092 TGCAGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGG 158151 ||| || ||| | |||| ||| | |||||||| ||| || |||| | || |||| || Sbjct 2591564 TGCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTTTCTGATGGTTTGTCTCTAGG 2591623 Query 158152 TATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCA 158211 || |||||||| || |||| ||| |||||||| | ||||||||| |||||||||| Sbjct 2591624 AATTTCTGGTACATTCAACTTCATAATTGTATTCAAGACAGAACACA---TCCTTATGCA 2591680 Query 158212 CCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGT 158248 ||| ||||| ||| | || || ||||| |||||| || Sbjct 2591681 CCCATTCCACATGTTAGGCGTAGCTGGTGTATTCTGT 2591717 >seq8 Length=7641483 Score = 107 bits (118), Expect = 2e-18 Identities = 124/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 158501 ACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGT 158560 || ||||| |||||||| |||| |||| | || ||||| ||||| |||| || | || Sbjct 525094 ACTATGGCTTTCAACCTAAACGATTTCCATTTTAACCAATCCATAGTTGACAATCCGAGT 525153 Query 158561 CGTGTGTTGAACACCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATG 158620 ||||| | || | ||| | ||| | | |||| ||| ||||||||||||||| ||| Sbjct 525154 CGTGTTATTAATATTTGGACTGATATCATCAACCATGCTAATCTTGGTATGGAAGTGATG 525213 Query 158621 CATGAGCGTAACGCACACAACTTCCCACTGGATCTTGCTGCTGCTGA 158667 ||||| ||||| || |||||||||| || || | ||||| | ||| Sbjct 525214 CATGAACGTAATGCTTACAACTTCCCTCTAGACTTAGCTGCAGTTGA 525260 >seq3 Length=8976907 Score = 89.7 bits (98), Expect = 6e-13 Identities = 147/211 (70%), Gaps = 5/211 (2%) Strand=Plus/Plus Query 157919 GAAGCAGCATCTCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCAACT---TGTAGTA 157975 ||||| |||| | |||| ||||| | || || || ||||||| | | || ||| || Sbjct 715733 GAAGCCGCATATGTTGATTAGTGGTTATACAATGGCGGTCCTTACGAGCTAATTGTTCTA 715792 Query 157976 TTC--CACTTCCTGATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTCTCTTACC 158033 ||| |||||| | | || | | ||| |||| |||||||||||||| || || Sbjct 715793 TTCTACACTTCTTAMTTGGTGTAGCTTGCTACATGGATCGTGAGTGGGAACTTAGTTTCC 715852 Query 158034 GTTTAGGTATGCGCCCATGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCGAGTG 158093 || | ||||||| || ||||| ||| |||||||| ||||| || || || || | || Sbjct 715853 GTCTGGGTATGCATCCTTGGATTGCTGTTGCATATTCAGCTCCTGTWGCAGCTGCTACTG 715912 Query 158094 CAGTATTCCTAGTCTATCCTTTCGGTCAAGG 158124 | || || | |||| | | | |||||||| Sbjct 715913 CTGTTTTATTGATCTACCTTATTGGTCAAGG 715943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 573023856744000