Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq2 129 7e-25 seq8 116 4e-21 seq6 116 4e-21 seq3 84.2 2e-11 >seq2 Length=11374105 Score = 129 bits (142), Expect = 7e-25 Identities = 130/169 (77%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 160287 TATATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTA 160346 || ||||| |||||||||||||| | |||||| |||||||| || ||||| ||| Sbjct 4329607 TACATGGGTCGTGAGTGGGAACTAAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGTT 4329666 Query 160347 GCATATTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTATATCCTTTCGGTCAA 160406 |||||||| ||||| || || || || ||||||| ||| | | || ||| | |||||| Sbjct 4329667 GCATATTCAGCTCCTGTAGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCAA 4329726 Query 160407 GGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACT 160455 || ||| || |||| ||||||||| || || ||||||||||| |||| Sbjct 4329727 GGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACT 4329775 >seq8 Length=7641483 Score = 116 bits (128), Expect = 4e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 160758 ATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTC 160817 || ||||| | |||| | ||| |||| || ||||| |||||||| |||| |||| | || Sbjct 525067 ATTTGGTTTATTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGATTTCCATTTT 525126 Query 160818 AACCAGTCCATCCTCGATGGTCAAGGTCGTGTACTGAACACCTGGGCAGACGTACTGAAT 160877 ||||| ||||| | || || ||||||| | || | ||| | || | | || Sbjct 525127 AACCAATCCATAGTTGACAATCCGAGTCGTGTTATTAATATTTGGACTGATATCATCAAC 525186 Query 160878 CGTGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGAC 160937 | |||| ||||||||||||||| |||||||| ||||| || |||||||||| || ||| Sbjct 525187 CATGCTAATCTTGGTATGGAAGTGATGCATGAACGTAATGCTTACAACTTCCCTCTAGAC 525246 Query 160938 CTCGCTGCTGCTGA 160951 | ||||| | ||| Sbjct 525247 TTAGCTGCAGTTGA 525260 >seq6 Length=8045491 Score = 116 bits (128), Expect = 4e-21 Identities = 121/158 (77%), Gaps = 3/158 (2%) Strand=Plus/Plus Query 160375 CTGCTGTATTCCTCGTATATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTG 160434 ||||||| ||| | | || ||| | |||||||| ||| || |||| | || |||| | Sbjct 2591563 CTGCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTTTCTGATGGTTTGTCTCTAG 2591622 Query 160435 GTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAATATCCTTATGC 160494 | || |||||||| || |||| ||| |||||||| | ||||||||| ||||||||| Sbjct 2591623 GAATTTCTGGTACATTCAACTTCATAATTGTATTCAAGACAGAACACA---TCCTTATGC 2591679 Query 160495 ATCCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGT 160532 | || ||||||||| | ||||| ||||| |||||| || Sbjct 2591680 ACCCATTCCACATGTTAGGCGTAGCTGGTGTATTCTGT 2591717 >seq3 Length=8976907 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/213 (70%), Gaps = 9/213 (4%) Strand=Plus/Plus Query 160203 GAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT---A 160259 |||||||||| ||||| ||||| | || || || ||||||| | | || | || | Sbjct 715733 GAAGCCGCATATGTTGATTAGTGGTTATACAATGGCGGTCCTTACGAGCTAATTGTTCTA 715792 Query 160260 TTT--CACTTCCTTATCGGCAT--CTATGCATATATGGGACGTGAGTGGGAACTTTCATA 160315 || |||||| | | || | || ||| || |||| ||||||||||||||| | Sbjct 715793 TTCTACACTTCTTAMTTGGTGTAGCT-TGC-TACATGGATCGTGAGTGGGAACTTAGTTT 715850 Query 160316 CCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCATC 160375 |||| | ||||||| || ||||| ||| |||||||| ||||| || || || || | Sbjct 715851 CCGTCTGGGTATGCATCCTTGGATTGCTGTTGCATATTCAGCTCCTGTWGCAGCTGCTAC 715910 Query 160376 TGCTGTATTCCTCGTATATCCTTTCGGTCAAGG 160408 |||||| || | | || | | | |||||||| Sbjct 715911 TGCTGTTTTATTGATCTACCTTATTGGTCAAGG 715943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559503860124000