Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17]
20 sequences; 136,670,443 total letters
Query= NC_026928.1
Length=189418
Score E
Sequences producing significant alignments: (Bits) Value
seq2 129 7e-25
seq6 109 7e-19
seq3 98.7 1e-15
>seq2
Length=11374105
Score = 129 bits (142), Expect = 7e-25
Identities = 130/169 (77%), Gaps = 0/169 (0%)
Strand=Plus/Plus
Query 178176 TACATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTA 178235
|||||||| |||||||||||||| | |||||| |||||||| || ||||| |||
Sbjct 4329607 TACATGGGTCGTGAGTGGGAACTAAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGTT 4329666
Query 178236 GCATACTCTGCTCCAGTAGCAGCAGCATCGGCAGTATTCCTGGTCTATCCTTTCGGTCAA 178295
||||| || ||||| |||||||| || | || || ||| || |||| ||| | ||||||
Sbjct 4329667 GCATATTCAGCTCCTGTAGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCAA 4329726
Query 178296 GGTTCATTTTCTGACGCAATGCCACTTGGCATCTCTGGTACATTCAACT 178344
|| |||||||| | ||||| || || || |||||||| |||||||
Sbjct 4329727 GGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACT 4329775
>seq6
Length=8045491
Score = 109 bits (120), Expect = 7e-19
Identities = 118/156 (76%), Gaps = 3/156 (2%)
Strand=Plus/Plus
Query 178266 GCAGTATTCCTGGTCTATCCTTTCGGTCAAGGTTCATTTTCTGACGCAATGCCACTTGGC 178325
|| || ||| || |||| ||| | |||||||| |||||||| | || | || ||
Sbjct 2591565 GCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTTTCTGATGGTTTGTCTCTAGGA 2591624
Query 178326 ATCTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAACACAACATTCTGATGCAC 178385
|| |||||||||||||||| ||| |||| ||| | |||||| |||| || ||||||
Sbjct 2591625 ATTTCTGGTACATTCAACTTCATAATTGTATTCAAGACAGAAC---ACATCCTTATGCAC 2591681
Query 178386 CCCTTCCACATGTTGGGTGTCGCAGGTGTATTCGGT 178421
|| ||||||||||| || || || ||||||||| ||
Sbjct 2591682 CCATTCCACATGTTAGGCGTAGCTGGTGTATTCTGT 2591717
>seq3
Length=8976907
Score = 98.7 bits (108), Expect = 1e-15
Identities = 152/213 (71%), Gaps = 9/213 (4%)
Strand=Plus/Plus
Query 178092 GAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT---A 178148
|||||||||| ||||| ||||| | || || || ||||||| | | || | || |
Sbjct 715733 GAAGCCGCATATGTTGATTAGTGGTTATACAATGGCGGTCCTTACGAGCTAATTGTTCTA 715792
Query 178149 TTT--CACTTCCTCATTGGTAT--CTATGCATACATGGGACGTGAGTGGGAACTTTCATA 178204
|| |||||| | ||||| | || ||| ||||||| ||||||||||||||| |
Sbjct 715793 TTCTACACTTCTTAMTTGGTGTAGCT-TGC-TACATGGATCGTGAGTGGGAACTTAGTTT 715850
Query 178205 CCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCTCCAGTAGCAGCAGCATC 178264
|||| | ||||||| || ||||| ||| ||||| || ||||| || ||||| || |
Sbjct 715851 CCGTCTGGGTATGCATCCTTGGATTGCTGTTGCATATTCAGCTCCTGTWGCAGCTGCTAC 715910
Query 178265 GGCAGTATTCCTGGTCTATCCTTTCGGTCAAGG 178297
|| || || || |||| | | | ||||||||
Sbjct 715911 TGCTGTTTTATTGATCTACCTTATTGGTCAAGG 715943
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 606009448497600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |