Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_027130.1 Length=172688 Score E Sequences producing significant alignments: (Bits) Value seq2 120 3e-22 seq6 116 4e-21 seq8 107 2e-18 >seq2 Length=11374105 Score = 120 bits (132), Expect = 3e-22 Identities = 128/169 (76%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 158706 TATATGGGACGTGAATGGGAACTTTCATACCGCTTAGGTATGCGCCCCTGGATCTGTGTA 158765 || ||||| ||||| |||||||| | ||| || |||||||| || ||||| ||| Sbjct 4329607 TACATGGGTCGTGAGTGGGAACTAAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGTT 4329666 Query 158766 GCATATTCTGCACCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAA 158825 |||||||| || || || || || || ||||||| ||| | |||| ||| | |||||| Sbjct 4329667 GCATATTCAGCTCCTGTAGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCAA 4329726 Query 158826 GGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACT 158874 || ||| || |||| ||||||||| || || ||||||||||| |||| Sbjct 4329727 GGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACT 4329775 >seq6 Length=8045491 Score = 116 bits (128), Expect = 4e-21 Identities = 121/158 (77%), Gaps = 3/158 (2%) Strand=Plus/Plus Query 158794 CTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTG 158853 ||||||| ||| | |||| ||| | |||||||| ||| || |||| | || |||| | Sbjct 2591563 CTGCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTTTCTGATGGTTTGTCTCTAG 2591622 Query 158854 GTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGC 158913 | || |||||||| || |||| ||| |||||||| | ||||||||| ||||||||| Sbjct 2591623 GAATTTCTGGTACATTCAACTTCATAATTGTATTCAAGACAGAACACA---TCCTTATGC 2591679 Query 158914 ACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGT 158951 |||| ||||| ||| | || || ||||| |||||| || Sbjct 2591680 ACCCATTCCACATGTTAGGCGTAGCTGGTGTATTCTGT 2591717 >seq8 Length=7641483 Score = 107 bits (118), Expect = 2e-18 Identities = 124/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 159204 ACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGT 159263 || ||||| |||||||| |||| |||| | || ||||| ||||| |||| || | || Sbjct 525094 ACTATGGCTTTCAACCTAAACGATTTCCATTTTAACCAATCCATAGTTGACAATCCGAGT 525153 Query 159264 CGTGTGTTGAACACCTGGGCAGATGTACTGAACCGTGCAGGTCTGGGTATGGAAGTTATG 159323 ||||| | || | ||| | ||| | | |||| ||| ||| ||||||||||| ||| Sbjct 525154 CGTGTTATTAATATTTGGACTGATATCATCAACCATGCTAATCTTGGTATGGAAGTGATG 525213 Query 159324 CATGAGCGTAACGCACACAACTTCCCACTCGACCTTGCTGCTGCTGA 159370 ||||| ||||| || |||||||||| || ||| | ||||| | ||| Sbjct 525214 CATGAACGTAATGCTTACAACTTCCCTCTAGACTTAGCTGCAGTTGA 525260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552473461881600