Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq2 140 4e-28 seq6 114 2e-20 seq8 98.7 1e-15 seq3 89.7 6e-13 >seq2 Length=11374105 Score = 140 bits (154), Expect = 4e-28 Identities = 133/170 (78%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 179187 CTATATGGGACGTGAGTGGGAACTTTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGT 179246 ||| ||||| |||||||||||||| || |||| | ||||||||||| ||||| ||| Sbjct 4329606 CTACATGGGTCGTGAGTGGGAACTAAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGT 4329665 Query 179247 TGCATACTCTGCACCAGTCGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCA 179306 |||||| || || || || || ||||| | ||| || ||| | |||| ||| | ||||| Sbjct 4329666 TGCATATTCAGCTCCTGTAGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCA 4329725 Query 179307 AGGTTCTTTCTCTGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACT 179356 ||| ||| ||||||| ||||||||| || || ||||||||||| |||| Sbjct 4329726 AGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACT 4329775 >seq6 Length=8045491 Score = 114 bits (126), Expect = 2e-20 Identities = 120/157 (76%), Gaps = 3/157 (2%) Strand=Plus/Plus Query 179277 TGCAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCTATGCCTCTTGG 179336 ||| || ||| | |||| ||| | |||||||| ||| ||||||| | || |||| || Sbjct 2591564 TGCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTTTCTGATGGTTTGTCTCTAGG 2591623 Query 179337 TATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCA 179396 || |||||||| || |||| ||| |||||||| | ||||||||| |||||||||| Sbjct 2591624 AATTTCTGGTACATTCAACTTCATAATTGTATTCAAGACAGAACACA---TCCTTATGCA 2591680 Query 179397 CCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGT 179433 ||| ||||| ||| | || || ||||| |||||| || Sbjct 2591681 CCCATTCCACATGTTAGGCGTAGCTGGTGTATTCTGT 2591717 >seq8 Length=7641483 Score = 98.7 bits (108), Expect = 1e-15 Identities = 122/167 (73%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 179686 ACCATGGCGTTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGACGGTCAAGGA 179745 || ||||| |||||||| |||| |||| | || ||||| ||||| ||||| || | Sbjct 525094 ACTATGGCTTTCAACCTAAACGATTTCCATTTTAACCAATCCATAGTTGACAATCCGAGT 525153 Query 179746 CGTGTCCTTAACACATGGGCGGACGTATTGAACCGTGCAGGTTTGGGTATGGAAGTTATG 179805 ||||| |||| | ||| | || | | |||| ||| | | ||||||||||| ||| Sbjct 525154 CGTGTTATTAATATTTGGACTGATATCATCAACCATGCTAATCTTGGTATGGAAGTGATG 525213 Query 179806 CATGAGCGTAACGCACACAACTTCCCACTCGACCTTGCTGCTGCTGA 179852 ||||| ||||| || |||||||||| || ||| | ||||| | ||| Sbjct 525214 CATGAACGTAATGCTTACAACTTCCCTCTAGACTTAGCTGCAGTTGA 525260 >seq3 Length=8976907 Score = 89.7 bits (98), Expect = 6e-13 Identities = 147/211 (70%), Gaps = 5/211 (2%) Strand=Plus/Plus Query 179104 GAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTAGTC--- 179160 ||||| |||| | ||| ||||| | || || || ||||||| | | || | || Sbjct 715733 GAAGCCGCATATGTTGATTAGTGGTTATACAATGGCGGTCCTTACGAGCTAATTGTTCTA 715792 Query 179161 TTC--CACTTCCTTATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTTTCTTACC 179218 ||| |||||| | | || | | ||| |||| ||||||||||||||| || || Sbjct 715793 TTCTACACTTCTTAMTTGGTGTAGCTTGCTACATGGATCGTGAGTGGGAACTTAGTTTCC 715852 Query 179219 GTCTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCTGCGAGTG 179278 |||| ||||||| ||| ||||| ||||||||| || || || || || ||||| | || Sbjct 715853 GTCTGGGTATGCATCCTTGGATTGCTGTTGCATATTCAGCTCCTGTWGCAGCTGCTACTG 715912 Query 179279 CAGTATTCCTCGTCTATCCTTTCGGTCAAGG 179309 | || || | |||| | | | |||||||| Sbjct 715913 CTGTTTTATTGATCTACCTTATTGGTCAAGG 715943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610329447417600