Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17]
20 sequences; 136,670,443 total letters
Query= NC_027132.1
Length=190768
Score E
Sequences producing significant alignments: (Bits) Value
seq2 140 4e-28
seq6 114 2e-20
seq8 98.7 1e-15
seq3 89.7 6e-13
>seq2
Length=11374105
Score = 140 bits (154), Expect = 4e-28
Identities = 133/170 (78%), Gaps = 0/170 (0%)
Strand=Plus/Plus
Query 179187 CTATATGGGACGTGAGTGGGAACTTTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGT 179246
||| ||||| |||||||||||||| || |||| | ||||||||||| ||||| |||
Sbjct 4329606 CTACATGGGTCGTGAGTGGGAACTAAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGT 4329665
Query 179247 TGCATACTCTGCACCAGTCGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCA 179306
|||||| || || || || || ||||| | ||| || ||| | |||| ||| | |||||
Sbjct 4329666 TGCATATTCAGCTCCTGTAGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCA 4329725
Query 179307 AGGTTCTTTCTCTGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACT 179356
||| ||| ||||||| ||||||||| || || ||||||||||| ||||
Sbjct 4329726 AGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACT 4329775
>seq6
Length=8045491
Score = 114 bits (126), Expect = 2e-20
Identities = 120/157 (76%), Gaps = 3/157 (2%)
Strand=Plus/Plus
Query 179277 TGCAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCTATGCCTCTTGG 179336
||| || ||| | |||| ||| | |||||||| ||| ||||||| | || |||| ||
Sbjct 2591564 TGCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTTTCTGATGGTTTGTCTCTAGG 2591623
Query 179337 TATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCA 179396
|| |||||||| || |||| ||| |||||||| | ||||||||| ||||||||||
Sbjct 2591624 AATTTCTGGTACATTCAACTTCATAATTGTATTCAAGACAGAACACA---TCCTTATGCA 2591680
Query 179397 CCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGT 179433
||| ||||| ||| | || || ||||| |||||| ||
Sbjct 2591681 CCCATTCCACATGTTAGGCGTAGCTGGTGTATTCTGT 2591717
>seq8
Length=7641483
Score = 98.7 bits (108), Expect = 1e-15
Identities = 122/167 (73%), Gaps = 0/167 (0%)
Strand=Plus/Plus
Query 179686 ACCATGGCGTTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGACGGTCAAGGA 179745
|| ||||| |||||||| |||| |||| | || ||||| ||||| ||||| || |
Sbjct 525094 ACTATGGCTTTCAACCTAAACGATTTCCATTTTAACCAATCCATAGTTGACAATCCGAGT 525153
Query 179746 CGTGTCCTTAACACATGGGCGGACGTATTGAACCGTGCAGGTTTGGGTATGGAAGTTATG 179805
||||| |||| | ||| | || | | |||| ||| | | ||||||||||| |||
Sbjct 525154 CGTGTTATTAATATTTGGACTGATATCATCAACCATGCTAATCTTGGTATGGAAGTGATG 525213
Query 179806 CATGAGCGTAACGCACACAACTTCCCACTCGACCTTGCTGCTGCTGA 179852
||||| ||||| || |||||||||| || ||| | ||||| | |||
Sbjct 525214 CATGAACGTAATGCTTACAACTTCCCTCTAGACTTAGCTGCAGTTGA 525260
>seq3
Length=8976907
Score = 89.7 bits (98), Expect = 6e-13
Identities = 147/211 (70%), Gaps = 5/211 (2%)
Strand=Plus/Plus
Query 179104 GAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTAGTC--- 179160
||||| |||| | ||| ||||| | || || || ||||||| | | || | ||
Sbjct 715733 GAAGCCGCATATGTTGATTAGTGGTTATACAATGGCGGTCCTTACGAGCTAATTGTTCTA 715792
Query 179161 TTC--CACTTCCTTATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTTTCTTACC 179218
||| |||||| | | || | | ||| |||| ||||||||||||||| || ||
Sbjct 715793 TTCTACACTTCTTAMTTGGTGTAGCTTGCTACATGGATCGTGAGTGGGAACTTAGTTTCC 715852
Query 179219 GTCTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCTGCGAGTG 179278
|||| ||||||| ||| ||||| ||||||||| || || || || || ||||| | ||
Sbjct 715853 GTCTGGGTATGCATCCTTGGATTGCTGTTGCATATTCAGCTCCTGTWGCAGCTGCTACTG 715912
Query 179279 CAGTATTCCTCGTCTATCCTTTCGGTCAAGG 179309
| || || | |||| | | | ||||||||
Sbjct 715913 CTGTTTTATTGATCTACCTTATTGGTCAAGG 715943
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 610329447417600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |