Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq3 125 9e-24 seq7 113 6e-20 >seq3 Length=8976907 Score = 125 bits (138), Expect = 9e-24 Identities = 230/335 (69%), Gaps = 4/335 (1%) Strand=Plus/Minus Query 11482 ATCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAA 11541 ||| ||||| || | | || ||||| ||||| || | |||||||| | ||||| Sbjct 5069970 ATCTAGGATGTCTGCCCTGTTTGTGGCGGCAATTACGATGATGCCAGTGTTGCCTTCAAA 5069911 Query 11542 GCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCAT 11601 ||||||||||| || || | |||||| | ||||| ||||| |||||||| | | | Sbjct 5069910 ACCATCCATCTCTGTCAGAAGTTGATTGAGGGTTTGCTCTCTTTCATCATT--CCCCCCT 5069853 Query 11602 ACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACAT 11659 | | |||| | | ||| |||| || |||||||| ||||||| || || ||||| Sbjct 5069852 CCAATGCCAGTTCCCCTCTGCCTGCCGACGGCATCAATTTCATCAACAAACACGATACAC 5069793 Query 11660 GGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACA 11719 || ||| || || | | ||||| || ||||||||| || || || |||||| Sbjct 5069792 GGAGCATTCTCTTTAGCCTTCTTGAAGAGGTCACGAACCCTTGAAGCTCCTACTCCAACA 5069733 Query 11720 AACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGCG 11779 |||||||| || || | | | || | || ||| |||||| || ||||| || Sbjct 5069732 AACATCTCTACGAATTCAGACCCTGAAATCGAGAAGAAGGGGACACCTGCCTCACCGGCA 5069673 Query 11780 ATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 |||||| ||| || || |||||||| || || || Sbjct 5069672 ATGGCTTTGGCAAGTAGTGTCTTTCCAGTTCCGGG 5069638 >seq7 Length=7914316 Score = 113 bits (124), Expect = 6e-20 Identities = 115/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 |||||| ||||| || ||||| || || || || |||||| || || |||||||| || Sbjct 1958934 GTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGGCC 1958993 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||| | ||| | || |||||||| |||||||||||||| ||||| || || Sbjct 1958994 GCGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTGCCGGAGAAGAAGATGCCCTCGACGCA 1959053 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGA 122819 || || || | ||||| ||||||||||| Sbjct 1959054 GGCGAAGGCGACGAGGCGCTCGGCGAAGGA 1959083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031842992000