Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq7 127 3e-24 seq18 113 6e-20 seq8 102 1e-16 >seq7 Length=7914316 Score = 127 bits (140), Expect = 3e-24 Identities = 118/150 (79%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 |||||| |||||||| ||||||||||| || || |||||| || || |||||||| || Sbjct 1958934 GTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGGCC 1958993 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 |||||||| | |||||| || || || || ||| ||||||||||| ||||| || || Sbjct 1958994 GCGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTGCCGGAGAAGAAGATGCCCTCGACGCA 1959053 Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAGGA 130176 ||||| || | ||| ||||| || ||||| Sbjct 1959054 GGCGAAGGCGACGAGGCGCTCGGCGAAGGA 1959083 >seq18 Length=4131207 Score = 113 bits (124), Expect = 6e-20 Identities = 258/382 (68%), Gaps = 10/382 (3%) Strand=Plus/Plus Query 14051 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 14110 ||||||| || || || || | ||| || | || |||||| ||||| | ||| Sbjct 1496244 ACGGTGACCTGCCGGTCGAATCTACCAGGCCTCAGAAGGGCGGAATCAAGAACATCGGGC 1496303 Query 14111 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCA---AAGCCATCCATCTCA 14167 ||||| |||||||||| ||| | || ||| | ||| | ||||| |||||||| Sbjct 1496304 CGGTTGGTCGCCGCGAGGACGATGACGCCGCT---GTTCCCGGAGAAGCCGTCCATCTCT 1496360 Query 14168 GTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAG-GCATACCACCCGCACT 14226 || | ||| || |||||||| ||||| | || || ||| | || | | ||||| | Sbjct 1496361 GTGAGGAGCTGGTTGATGGTCTGTTCCCTCTCGTCGTTCCCGCCGCCGAGC-CCCGCTCC 1496419 Query 14227 GCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCAC- 14285 || ||| | ||||||||||| || || |||||||| ||||| || || | || || Sbjct 1496420 TCGCTGCCTTCCGACGGCGTCGATCTCGTCGATGAAGACGATGCA-GGGGGCCTTGGACT 1496478 Query 14286 GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAA 14345 ||| || |||| || | || | || || ||||| || || | |||||| | Sbjct 1496479 TGGCCTTCTCGAAGAGGTCCCTGACCCGGGAAGCTCCCACACCGACGAAGAGCTCCACGA 1496538 Query 14346 AATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGA 14405 | | || ||||| || || |||||| ||| | || || |||| ||| ||||| | Sbjct 1496539 ACTCGGAGGCGGCGCAGGAGAAGAAGGGCACGCCCGCCTCGCCGGCGACGGCGCGGGCCA 1496598 Query 14406 GGAGGGTCTTCCCCGTCCCTGG 14427 | || ||||||||||| || || Sbjct 1496599 GCAGCGTCTTCCCCGTGCCGGG 1496620 >seq8 Length=7641483 Score = 102 bits (112), Expect = 1e-16 Identities = 256/384 (67%), Gaps = 14/384 (4%) Strand=Plus/Minus Query 14051 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 14110 ||||||| || || ||||| | || || | || |||||| ||| || | ||| | Sbjct 1565012 ACGGTGACCTGCCGGTCAAACCTGCCGGGCCTCAGAAGGGCGGAGTCGAGAACATCGGGG 1564953 Query 14111 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCA---AAGCCATCCATCTCA 14167 ||||| || || |||| ||| | || || | ||| | ||||| |||||||| Sbjct 1564952 CGGTTGGTAGCGGCGAGGACGATGACTCCGCT---GTTCCCGGAGAAGCCGTCCATCTCG 1564896 Query 14168 GTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATACCA--CCCGCAC 14225 |||| || || |||||||| || || | || || ||| | || | | ||||| | Sbjct 1564895 GTCAGAAGCTGGTTGATGGTCTGCTCCCTCTCGTCGTTCCC--GCCGCCGAGTCCCGCTC 1564838 Query 14226 TGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCAC 14285 || ||| | ||||||||||| || ||||||||||| ||||| || || | ||| | Sbjct 1564837 CTCGCTGCCTCCCGACGGCGTCGATCTCATCGATGAAGACGATGCAGGG--GGCCTTCGC 1564780 Query 14286 GGGCAACT--TCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCAC 14343 | || || || | || | ||||||| || || || || || || | |||||| Sbjct 1564779 CTTCGCCTTCTCGAACAGGTCCCTCACTCTCGAAGCTCCCACGCCGACGAAAAGCTCCAC 1564720 Query 14344 AAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGC 14403 || | || |||| || || |||||| ||| | ||| || |||| || ||||| Sbjct 1564719 GAACTCGGAAGCGGCGCAGGAGAAGAAGGGCACGCCGGCTTCTCCGGCGACTGCGCGGGC 1564660 Query 14404 GAGGAGGGTCTTCCCCGTCCCTGG 14427 || || |||||||| || || || Sbjct 1564659 CAGCAGCGTCTTCCCGGTGCCGGG 1564636 Score = 100 bits (110), Expect = 4e-16 Identities = 256/380 (67%), Gaps = 16/380 (4%) Strand=Plus/Minus Query 14095 GTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAA 14154 ||| ||||| || |||||| || || |||| ||| | ||| ||||| | | || || Sbjct 1765838 GTCGAGGATGTCCGCGCGGTTGGTGGCGGCGACGACGATGATCCCCGTGTTGCCCTCGAA 1765779 Query 14155 GCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAG-GC- 14212 ||| |||||||| |||| ||| || |||| ||| || || | ||| || ||| | || Sbjct 1765778 GCCGTCCATCTCCGTCAGGAGCTGGTTGAGGGTCTGCTCCCTTTCGTCGTTCCCTCCGCC 1765719 Query 14213 -ATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACA 14271 || || | | || ||| | ||||||||||| || || |||| ||| ||||| || Sbjct 1765718 GATTCCTGTCCCCCTC---TGCCTCCCGACGGCGTCGATCTCGTCGACGAACACGATGCA 1765662 Query 14272 TGGTTGATTTTCACGGGCAACTTC--AAAGATATCTCGCACTCTCTTGGCACCGACACCC 14329 || || || ||| |||| |||| || || || | | ||| ||||| || Sbjct 1765661 GGGGGCGTTCTCCTTGGC--CTTCTTGAAGAGGTCGCGGACCCGCGAGGCGCCGACCCCG 1765604 Query 14330 ACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTAGATTCACC 14388 || ||||||||||| || | || | | | || | || |||||| ||| | || || Sbjct 1765603 ACGAACATCTCCACGAACTCGGACCCCG-AGATGGAGAAGAAGGGCACGCCGGCCTCGCC 1765545 Query 14389 CGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACC 14448 |||||||| ||| || | |||||||| || || || ||| |||||| ||||| Sbjct 1765544 GGCGATGGCCTTGGCCAGCAACGTCTTCCCAGTTCCCGGGGGCCCGACGAGAA--GCACC 1765487 Query 14449 ACGT--GGGATCCTGGCACC 14466 | | ||||| | ||| || Sbjct 1765486 CCTTTGGGGATGCGGGCGCC 1765467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618435045391200