Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17]
20 sequences; 136,670,443 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq7 145 9e-30
seq3 120 4e-22
seq18 93.3 5e-14
seq8 82.4 9e-11
>seq7
Length=7914316
Score = 145 bits (160), Expect = 9e-30
Identities = 122/150 (81%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854
||||| || ||||| ||| |||| || || || || ||||| ||||||||||| || |
Sbjct 1959083 TCCTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCCGGCAGC 1959024
Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914
|||||||| || | |||||||||||||| || |||||||| || ||| ||||||||||
Sbjct 1959023 TTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAAC 1958964
Query 94915 GAGCTTATCTCTCGTGACGAGGGACTCCAC 94944
||||| ||||| || |||||||| ||||||
Sbjct 1958963 GAGCTCATCTCCCGCGACGAGGGCCTCCAC 1958934
>seq3
Length=8976907
Score = 120 bits (132), Expect = 4e-22
Identities = 238/342 (70%), Gaps = 18/342 (5%)
Strand=Plus/Minus
Query 9556 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACC--TGTTTCATTATCA 9613
||| ||||| || | | || || ||||| || || | || || |||| | || ||
Sbjct 5069970 ATCTAGGATGTCTGCCCTGTTTGTGGCGGCAATTACGATGATGCCAGTGTTGCCTT--CA 5069913
Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9673
||||||||||||||||||| |||||| || | ||||| || | |||||||||| | |
Sbjct 5069912 AAACCATCCATCTCTGTCAGAAGTTGATTGAGGGTTTGCTCTCTTTCATCATTCCC--CC 5069855
Query 9674 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 9731
| | | |||| | | ||| | || ||||||||||| ||||||| || ||||| |
Sbjct 5069854 CTCCAATGCCAGTTCCCCTCTGCCTGCCGACGGCATCAATTTCATCAACAAACACGATAC 5069795
Query 9732 ATGGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTG--GCGCCCACA 9787
| || ||| || ||| |||| ||||| || || || |||| || || ||
Sbjct 5069794 ACGGAGCATTCTCTTTAGC--CTTCTTGAAGAGGTCACG--AACCCTTGAAGCTCCTACT 5069739
Query 9788 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTC 9846
|||||||||||||| || || | | | ||| || | || |||||||||| | ||
Sbjct 5069738 CCAACAAACATCTCTACGAATTCAGACCCTGAA-ATCGAGAAGAAGGGGACACCTGCCTC 5069680
Query 9847 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888
||| ||||||||| ||| || || ||||| || || || ||
Sbjct 5069679 ACCGGCAATGGCTTTGGCAAGTAGTGTCTTTCCAGTTCCGGG 5069638
>seq18
Length=4131207
Score = 93.3 bits (102), Expect = 5e-14
Identities = 200/296 (68%), Gaps = 10/296 (3%)
Strand=Plus/Plus
Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTG-G 9672
|| || ||||||||||| | || ||||| || || ||||||| || || ||| | |
Sbjct 1496346 AAGCCGTCCATCTCTGTGAGGAGCTGGTTGATGGTCTGTTCCCTCTCGTCGTTCCCGCCG 1496405
Query 9673 CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 9732
| | | || || | || ||| |||| ||||| || ||||| || ||||||||||||||
Sbjct 1496406 CCGAGCCCC-GCTCCTCGCTGCCTTCCGACGGCGTCGATCTCGTCGATGAAGACGATGCA 1496464
Query 9733 TGG----TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACAC 9788
|| ||| || || | || ||||| |||| || || || |||||||
Sbjct 1496465 GGGGGCCTTGGACTTGGCCTTC----TCGAAGAGGTCCCTGACCCGGGAAGCTCCCACAC 1496520
Query 9789 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCAC 9848
| || || | |||||| || | | ||||| || || |||||| || | || |
Sbjct 1496521 CGACGAAGAGCTCCACGAACTCGGAGGCGGCGCAGGAGAAGAAGGGCACGCCCGCCTCGC 1496580
Query 9849 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGG 9904
| || | ||| ||||| || || ||||| ||||| || || |||| | ||||||
Sbjct 1496581 CGGCGACGGCGCGGGCCAGCAGCGTCTTCCCCGTGCCGGGAGGACCCACCAGGAGG 1496636
>seq8
Length=7641483
Score = 82.4 bits (90), Expect = 9e-11
Identities = 119/167 (71%), Gaps = 1/167 (1%)
Strand=Plus/Minus
Query 7298 ACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTGGCTCGTC 7357
|| |||||| |||| ||||| ||||| | | | ||||| || || || ||| | |
Sbjct 1233937 ACGCCCTTCCACCCCCGCTCCCCCTACGCCGCCGCCAAGGTGGCCGCCCACTGGTACACC 1233878
Query 7358 AAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAACCATGAA 7417
|| |||||||| | ||||| || || || ||| ||| |||||||||||||||||
Sbjct 1233877 GTCAACTACCGCGAAGCCTACGGCCTCTTCGCTTGCAACGGCATCCTCTTCAACCATGAG 1233818
Query 7418 TCACCGAGACGAGGTGCAGACTTTGTCACAAAGAAGATTACCGAGGG 7464
|| || | || || | | |||| ||||| |||||| ||| ||||
Sbjct 1233817 TCGCCCCGCCGCGGCGAAAACTTCGTCACTCGGAAGATCACC-AGGG 1233772
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583260654184800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |