Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq7 145 9e-30 seq3 120 4e-22 seq18 93.3 5e-14 seq8 82.4 9e-11 >seq7 Length=7914316 Score = 145 bits (160), Expect = 9e-30 Identities = 122/150 (81%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 ||||| || ||||| ||| |||| || || || || ||||| ||||||||||| || | Sbjct 1959083 TCCTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCCGGCAGC 1959024 Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 |||||||| || | |||||||||||||| || |||||||| || ||| |||||||||| Sbjct 1959023 TTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAAC 1958964 Query 94915 GAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 ||||| ||||| || |||||||| |||||| Sbjct 1958963 GAGCTCATCTCCCGCGACGAGGGCCTCCAC 1958934 >seq3 Length=8976907 Score = 120 bits (132), Expect = 4e-22 Identities = 238/342 (70%), Gaps = 18/342 (5%) Strand=Plus/Minus Query 9556 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACC--TGTTTCATTATCA 9613 ||| ||||| || | | || || ||||| || || | || || |||| | || || Sbjct 5069970 ATCTAGGATGTCTGCCCTGTTTGTGGCGGCAATTACGATGATGCCAGTGTTGCCTT--CA 5069913 Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9673 ||||||||||||||||||| |||||| || | ||||| || | |||||||||| | | Sbjct 5069912 AAACCATCCATCTCTGTCAGAAGTTGATTGAGGGTTTGCTCTCTTTCATCATTCCC--CC 5069855 Query 9674 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 9731 | | | |||| | | ||| | || ||||||||||| ||||||| || ||||| | Sbjct 5069854 CTCCAATGCCAGTTCCCCTCTGCCTGCCGACGGCATCAATTTCATCAACAAACACGATAC 5069795 Query 9732 ATGGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTG--GCGCCCACA 9787 | || ||| || ||| |||| ||||| || || || |||| || || || Sbjct 5069794 ACGGAGCATTCTCTTTAGC--CTTCTTGAAGAGGTCACG--AACCCTTGAAGCTCCTACT 5069739 Query 9788 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTC 9846 |||||||||||||| || || | | | ||| || | || |||||||||| | || Sbjct 5069738 CCAACAAACATCTCTACGAATTCAGACCCTGAA-ATCGAGAAGAAGGGGACACCTGCCTC 5069680 Query 9847 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 ||| ||||||||| ||| || || ||||| || || || || Sbjct 5069679 ACCGGCAATGGCTTTGGCAAGTAGTGTCTTTCCAGTTCCGGG 5069638 >seq18 Length=4131207 Score = 93.3 bits (102), Expect = 5e-14 Identities = 200/296 (68%), Gaps = 10/296 (3%) Strand=Plus/Plus Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTG-G 9672 || || ||||||||||| | || ||||| || || ||||||| || || ||| | | Sbjct 1496346 AAGCCGTCCATCTCTGTGAGGAGCTGGTTGATGGTCTGTTCCCTCTCGTCGTTCCCGCCG 1496405 Query 9673 CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 9732 | | | || || | || ||| |||| ||||| || ||||| || |||||||||||||| Sbjct 1496406 CCGAGCCCC-GCTCCTCGCTGCCTTCCGACGGCGTCGATCTCGTCGATGAAGACGATGCA 1496464 Query 9733 TGG----TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACAC 9788 || ||| || || | || ||||| |||| || || || ||||||| Sbjct 1496465 GGGGGCCTTGGACTTGGCCTTC----TCGAAGAGGTCCCTGACCCGGGAAGCTCCCACAC 1496520 Query 9789 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCAC 9848 | || || | |||||| || | | ||||| || || |||||| || | || | Sbjct 1496521 CGACGAAGAGCTCCACGAACTCGGAGGCGGCGCAGGAGAAGAAGGGCACGCCCGCCTCGC 1496580 Query 9849 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGG 9904 | || | ||| ||||| || || ||||| ||||| || || |||| | |||||| Sbjct 1496581 CGGCGACGGCGCGGGCCAGCAGCGTCTTCCCCGTGCCGGGAGGACCCACCAGGAGG 1496636 >seq8 Length=7641483 Score = 82.4 bits (90), Expect = 9e-11 Identities = 119/167 (71%), Gaps = 1/167 (1%) Strand=Plus/Minus Query 7298 ACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTGGCTCGTC 7357 || |||||| |||| ||||| ||||| | | | ||||| || || || ||| | | Sbjct 1233937 ACGCCCTTCCACCCCCGCTCCCCCTACGCCGCCGCCAAGGTGGCCGCCCACTGGTACACC 1233878 Query 7358 AAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAACCATGAA 7417 || |||||||| | ||||| || || || ||| ||| ||||||||||||||||| Sbjct 1233877 GTCAACTACCGCGAAGCCTACGGCCTCTTCGCTTGCAACGGCATCCTCTTCAACCATGAG 1233818 Query 7418 TCACCGAGACGAGGTGCAGACTTTGTCACAAAGAAGATTACCGAGGG 7464 || || | || || | | |||| ||||| |||||| ||| |||| Sbjct 1233817 TCGCCCCGCCGCGGCGAAAACTTCGTCACTCGGAAGATCACC-AGGG 1233772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260654184800